Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq945 176 5e-38 seq3314 100 3e-15 seq13482 91.5 2e-12 seq2572 86.0 8e-11 >seq945 Length=6199 Score = 176 bits (194), Expect = 5e-38 Identities = 232/314 (74%), Gaps = 6/314 (2%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || || || ||||| || ||||| ||||| |||||||| || | | |||| || |||||| Sbjct 1917 GAATGAATATTCTCAATCGCGATTTGGAATCCGTAAAACGCACGCGCCTCGGCGACTTGG 1858 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || ||||| ||||| || || ||||| ||| ||||||||||| ||||||||| Sbjct 1857 ACTTCTTTCATAAACCGACCAGCGAGGTTTTCGAGAACGATGCCGTCTGACGCGGCGAAA 1798 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 ||||| |||||||| | || |||||||| ||| ||||| | | | |||||| |||| Sbjct 1797 AAAGCGAGGACGTGAGTAATGAAGTGGCGTTCGCCGTCGGTTAAGGCGTCCCAGT-GACG 1739 Query 869813 GTG-TCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 || || || | || || || ||||||||||| | ||||| ||||| ||||| || Sbjct 1738 TTGATCTTCGGATAAATCGACTTCTTCGGCGGTCCAAAATGAGGCTTCGGCTTTTTTATA 1679 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGT-TGGGGTTGTCG 869929 ||| ||||| | ||| |||| | || ||||| | ||| || || | |||| ||| | Sbjct 1678 CATTTCCCAGATTTGTGGGTATTGAATTGGGAACA-TACAGAATCGATCTGGGTTTGGTG 1620 Query 869930 CGCAACAGGGGTTC 869943 | ||| || ||||| Sbjct 1619 C-CAAAAGTGGTTC 1607 >seq3314 Length=31422 Score = 100 bits (110), Expect = 3e-15 Identities = 191/276 (69%), Gaps = 4/276 (1%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||| ||||| ||||| ||||| ||||| || |||||||| || | |||| || | | Sbjct 22997 CCGAATGGATATTCTCAATGGCAATCTGAAACCCGTAAAAAGCACGTGCCTCGGCGATCT 23056 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | | ||| ||||| |||| |||| || || || || || || ||||||| Sbjct 23057 GTATCTCTTTCATAAACCTTGAAGCCAAATTTTCCAAAACAATTCCATCTGATGCGGCGA 23116 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGA 869810 |||| || || ||||| | | ||||| || ||| |||| | | |||| | | || | Sbjct 23117 AAAATGCGAGAACGTGAGTCACGAAGTGACGTTCGCCGTCTGTTAACGACTCGTAATG-A 23175 Query 869811 CGGTG-TCG-GCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTT 869868 || || || ||| | | || || || || || ||||| | ||||| ||||| ||||| Sbjct 23176 CGTTGGTCTTGCGATAAA-TCGACTTCTTCTGCTGTCCAAAATGAGGCTTCGGCTTTTTT 23234 Query 869869 GTACATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 |||||| ||||| | ||| |||| |||| || || Sbjct 23235 GTACATTTCCCAAATTTGTGGGTATTGGATTGGAAA 23270 >seq13482 Length=36463 Score = 91.5 bits (100), Expect = 2e-12 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 |||||| |||||| | | | || | ||||||||||||||||| || | | | | Sbjct 26973 TGGCCAACTCGCCGGGAAGAACGAGTCTGACGGCGGTCTGGATCTCACGGGAGGAAAGGG 27032 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGC-CGATGCGGTCGATCATG 1254464 |||| |||||| | ||||| | ||||||| ||| ||| |||| ||| Sbjct 27033 TGTTCTTCTTGTTGTACCTGGCCAGCTTGGCGGCCTCC-TGCGCGAGCTTCTCGAAGATG 27091 Query 1254465 TCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGC 1254524 ||||||| ||||||||||||| ||| | |||| ||||||| || | ||||| || Sbjct 27092 TCGTTGATGAACGAGTTCATGATTCCCATGGCCTTGCTGGAGATCCCGATATCGGGATGG 27151 Query 1254525 ACCTGCTTGAGCACCTTGTAGATG 1254548 ||||| ||||| |||||| ||||| Sbjct 27152 ACCTGTTTGAGGACCTTGAAGATG 27175 >seq2572 Length=8519 Score = 86.0 bits (94), Expect = 8e-11 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 |||||| |||||| | | | || | ||||||||||||||||| || | | | | Sbjct 4088 TGGCCAACTCGCCGGGAAGAACGAGTCTGACGGCGGTCTGGATCTCACGGGAGGAAAGGG 4029 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGC-CGATGCGGTCGATCATG 1254464 |||| |||||| | || || | ||||||| ||| ||| |||| ||| Sbjct 4028 TGTTCTTCTTGTTGTACCTGGCGAGCTTGGCGGCCTCC-TGCGCGAGCTTCTCGAAGATG 3970 Query 1254465 TCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGC 1254524 ||||||| ||||||||||||| ||| | |||| ||||||| || | ||||| || Sbjct 3969 TCGTTGATGAACGAGTTCATGATTCCCATGGCCTTGCTGGAGATCCCGATATCGGGATGG 3910 Query 1254525 ACCTGCTTGAGCACCTTGTAGATG 1254548 ||||| ||||| |||||| ||||| Sbjct 3909 ACCTGTTTGAGGACCTTGAAGATG 3886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105491751488775