Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq13411 105 6e-18 seq5340 105 6e-18 seq4586 87.8 1e-12 seq16550 86.0 5e-12 >seq13411 Length=19963 Score = 105 bits (116), Expect = 6e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAA-ACGGAGCC 110328 |||||||| || || || ||||| |||||||||||||| || ||| | ||| || | || Sbjct 11259 AAAATGCAGATCTTCGTAAAAACCTTAACCGGCAAAACAATAACCTTAGAAGTCGAATCC 11318 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 | ||| || ||| | | || ||| |||||| |||||||||||| | || || Sbjct 11319 T-CCGACACAATCGACAATGTGAAAGCCAAGATTCAAGACAAAGAAGGCATCCCACCAGA 11377 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 |||||| | | || | ||| || ||||| || || || | ||| ||| | || || || Sbjct 11378 CCAACAACGTTTAATCTTTGCAGGCAAACAACTTGAAGACGGCAGGACATTAGCCGACTA 11437 Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 ||| || ||||||||||| || | || |||| ||| Sbjct 11438 CAATATCCAAAAAGAATCCACTCTTCATTTGGTCTTA 11474 >seq5340 Length=22833 Score = 105 bits (116), Expect = 6e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCC 110328 |||||||| || || || ||||| |||||||||||||| || ||| | ||| || | || Sbjct 14492 AAAATGCAGATCTTCGTAAAAACCTTAACCGGCAAAACAATAACCTTAGAAGTCGAATCC 14433 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 | ||| || ||| | | || ||| |||||| |||||||||||| | || || Sbjct 14432 TC-CGACACAATCGACAATGTGAAAGCCAAGATTCAAGACAAAGAAGGCATCCCACCAGA 14374 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 |||||| | | || | ||| || ||||| || || || | ||| ||| | || || || Sbjct 14373 CCAACAACGTTTAATCTTTGCAGGCAAACAACTTGAAGACGGCAGGACATTAGCCGACTA 14314 Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 ||| || ||||||||||| || | || |||| ||| Sbjct 14313 CAATATCCAAAAAGAATCCACTCTTCATTTGGTCTTA 14277 >seq4586 Length=18721 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329 ||||| |||||||| |||||||| || || || ||||| || |||| |||| || Sbjct 14107 ATGCAGATATTTGTGAAAACTTTGACTGGAAAGACCATCACTCTCGAGGTGGAGAGCTCT 14048 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || | | | | || || |||||| ||||||||||| | ||| ||| Sbjct 14047 GAC---ACCATTGACAATGTTAAGGCCAAGATTCAAGACAAAGAAGGGATTCCCCCAGAT 13991 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || || || || | ||| || |||||||| ||||| | | || | || || ||| Sbjct 13990 CAGCAGAGGCTGATCTTTGCCGGGAAACAGCTTGAGGACGGTCGTACCCTTGCTGACTAC 13931 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 |||||||| || ||||| || | ||| ||||| Sbjct 13930 AACATTCAGAAGGAATCGACCCTTCACTTGGTG 13898 >seq16550 Length=20979 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/221 (70%), Gaps = 7/221 (3%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CG-GAGC 110327 || ||||| || ||||| || ||| | || || || ||||| || ||||| || |||| Sbjct 18588 AATATGCAGATCTTTGTTAAGACTCTCACGGGTAAGACCATCACTCTCGAAGTCGAGAGC 18529 Query 110328 -CTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTG 110386 ||||| ||| ||| | |||| | || || ||||||||||| | ||| Sbjct 18528 TCTGAC---ACTATCGATAATGTAAGGCCAAA-ATCCAAGACAAAGAAGGTATCCCCCCA 18473 Query 110387 GATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGAT 110446 ||||| ||||| | || | ||| || || ||||| ||||||| ||| || |||| || Sbjct 18472 GATCAGCAAAGGTTGATCTTTGCTGGAAAGCAGCTCGAGGATGGCAGGACCCTGGCAGAC 18413 Query 110447 TACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAG 110487 ||||| |||||||| ||||| || | || | ||||| || Sbjct 18412 TACAATATTCAAAAGGAATCAACCCTCCATCTTGTGTTGAG 18372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412740592496975