Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq945 149 1e-29 seq13482 127 3e-23 seq9138 127 3e-23 seq2572 123 4e-22 seq14411 118 2e-20 seq11076 86.0 1e-10 >seq945 Length=6199 Score = 149 bits (164), Expect = 1e-29 Identities = 184/249 (74%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| |||||||| || ||||| || || || || ||||| || ||||||||| Sbjct 1872 GCCTCGGCGACTTGGACTTCTTTCATAAACCGACCAGCGAGGTTTTCGAGAACGATGCCG 1813 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||||||||||| ||||||||||| | || ||||| || ||| ||||| | | Sbjct 1812 TCTGACGCGGCGAAAAAAGCGAGGACGTGAGTAATGAAGTGGCGTTCGCCGTCGGTTAAG 1753 Query 796270 GAGACCCAGTGGACCGTG-TCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 | | |||||| ||| || || || | ||||| || |||||||||||||| ||||| Sbjct 1752 GCGTCCCAGT-GACGTTGATCTTCGGATAAATCGACTTCTTCGGCGGTCCAAAATGAGGC 1694 Query 796329 CTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCG 796388 ||||| ||||| ||||| ||||| || || |||| | || ||||||| | || || Sbjct 1693 TTCGGCTTTTTTATACATTTCCCAGATTTGTGGGTATTGAATTGGGAACATACAGAATCG 1634 Query 796389 ATTGGGGTT 796397 || ||||| Sbjct 1633 ATCTGGGTT 1625 >seq13482 Length=36463 Score = 127 bits (140), Expect = 3e-23 Identities = 172/237 (73%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||| || ||||| || ||||| ||||||||||| |||||| |||||| | | | Sbjct 26934 ACTTGGTAACAGCCTTTGTGCCCTCGGAGACGGCGTGTTTGGCCAACTCGCCGGGAAGAA 26993 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCG 1485592 || | ||||||||||||||||| |||| | | ||||| |||||| | | Sbjct 26994 CGAGTCTGACGGCGGTCTGGATCTCACGGGAGGAAAGGGTGTTCTTCTTGTTGTACCTGG 27053 Query 1485593 CCAGGCGGCCGGCCTCGGTGC-CGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 |||| | ||||||| ||| ||| |||| |||||||||| |||||||||||| Sbjct 27054 CCAGCTTGGCGGCCTC-CTGCGCGAGCTTCTCGAAGATGTCGTTGATGAACGAGTTCATG 27112 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 || ||| | ||| ||||||| || | ||||| || ||||| ||||| |||||| Sbjct 27113 ATTCCCATGGCCTTGCTGGAGATCCCGATATCGGGATGGACCTGTTTGAGGACCTTG 27169 >seq9138 Length=9078 Score = 127 bits (140), Expect = 3e-23 Identities = 172/237 (73%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||||||||||||||| || || ||||||||||| | |||| |||||| | | | Sbjct 7381 ACTTGGTGACGGCCTTGGTGCCTTCAGAGACGGCGTGTTTCGCCAACTCGCCGGGAAGAA 7322 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCG 1485592 || | ||||||||||||||||| |||| | ||||| |||||| | | Sbjct 7321 CGAGTCTGACGGCGGTCTGGATCTCACGGGAAGAAAGGGTGTTCTTCTTGTTGTACCTGG 7262 Query 1485593 CCAGGCGGCCGGCCTCGGTGC-CGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 |||| | ||||||| ||| ||| |||| |||||||||| |||||||||||| Sbjct 7261 CCAGCTTGGCGGCCTC-CTGCGCGAGCTTCTCGAAGATGTCGTTGATGAACGAGTTCATG 7203 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 || ||| | ||| ||||||| || | ||||| || ||||| ||||| |||||| Sbjct 7202 ATTCCCATGGCCTTGCTGGAGATCCCGATATCGGGATGGACCTGTTTGAGGACCTTG 7146 >seq2572 Length=8519 Score = 123 bits (136), Expect = 4e-22 Identities = 171/237 (72%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||| || ||||| || ||||| ||||||||||| |||||| |||||| | | | Sbjct 4127 ACTTGGTAACAGCCTTTGTGCCCTCGGAGACGGCGTGTTTGGCCAACTCGCCGGGAAGAA 4068 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCG 1485592 || | ||||||||||||||||| |||| | | ||||| |||||| | | Sbjct 4067 CGAGTCTGACGGCGGTCTGGATCTCACGGGAGGAAAGGGTGTTCTTCTTGTTGTACCTGG 4008 Query 1485593 CCAGGCGGCCGGCCTCGGTGC-CGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 | || | ||||||| ||| ||| |||| |||||||||| |||||||||||| Sbjct 4007 CGAGCTTGGCGGCCTC-CTGCGCGAGCTTCTCGAAGATGTCGTTGATGAACGAGTTCATG 3949 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 || ||| | ||| ||||||| || | ||||| || ||||| ||||| |||||| Sbjct 3948 ATTCCCATGGCCTTGCTGGAGATCCCGATATCGGGATGGACCTGTTTGAGGACCTTG 3892 >seq14411 Length=27087 Score = 118 bits (130), Expect = 2e-20 Identities = 173/241 (72%), Gaps = 3/241 (1%) Strand=Plus/Minus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||||||||||||||| ||||| ||||||||||| | |||| ||| ||| | | | Sbjct 1304 ACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGTTTCGCCAATTCACCGGGGAGAA 1245 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCG 1485592 || | ||||||||||||||||| |||| | ||||| |||||| | | Sbjct 1244 CGAGTCTGACGGCGGTCTGGATCTCACGGGAAGAAAGGGTGTTCTTCTTGTTGTACCTGG 1185 Query 1485593 CCAGGCGGCCGGCCTCGGTGC-CGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 |||| |||| || ||| ||| |||| |||||||||| ||| ||||||||| Sbjct 1184 CCAGCTTAGCGGCTTC-CTGCGCGAGCTTCTCGAAGATGTCGTTGATAAATGAGTTCATG 1126 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAA 1485711 || ||| | ||| |||| || || | ||||| || ||||| ||||| ||| ||||| Sbjct 1125 ATTCCCATGGCCTTGCTGGAAATCCCGATATCGGGATGGACCTGTTTGAGGACC-TGTAA 1067 Query 1485712 A 1485712 | Sbjct 1066 A 1066 Score = 118 bits (130), Expect = 2e-20 Identities = 173/241 (72%), Gaps = 3/241 (1%) Strand=Plus/Minus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||| || |||||||| ||||| |||||| |||| |||||| || ||| | | | Sbjct 9251 ACTTGGTAACAGCCTTGGTGCCCTCAGAGACGACGTGTTTGGCCAACTCACCGGGAAGAA 9192 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCG 1485592 || | ||||||||||||||||| |||| | | ||||| |||||| | | Sbjct 9191 CGAGTCTGACGGCGGTCTGGATCTCACGGGAGGAAAGGGTGTTCTTCTTGTTGTACCTGG 9132 Query 1485593 CCAGGCGGCCGGCCTCGGTGC-CGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 |||| | ||||||| ||| ||| |||| |||||||||| || ||||||||| Sbjct 9131 CCAGCTTGGCGGCCTC-CTGCGCGAGCTTCTCGAAGATGTCGTTGATGAAAGAGTTCATG 9073 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAA 1485711 || ||| | ||| ||||||| || | ||||| || ||||| ||||| ||| ||||| Sbjct 9072 ATTCCCATGGCCTTGCTGGAGATCCCGATATCGGGATGGACCTGTTTGAGGACC-TGTAA 9014 Query 1485712 A 1485712 | Sbjct 9013 A 9013 >seq11076 Length=32571 Score = 86.0 bits (94), Expect = 1e-10 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||||||||||||||| ||||| ||||||||||| | |||| ||| ||| | | | Sbjct 126 ACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGTTTCGCCAATTCACCGGGGAGAA 67 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 || | ||||||||||||||||| |||| Sbjct 66 CGAGTCTGACGGCGGTCTGGATCTCACGGG 37 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914110930687925