Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq8889 104 2e-17 seq10926 102 6e-17 seq4586 96.9 3e-15 seq16550 87.8 1e-12 seq16006 84.2 2e-11 seq1845 84.2 2e-11 >seq8889 Length=9065 Score = 104 bits (114), Expect = 2e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAA-CGGAGGC 107611 || ||||| || || ||||| || || ||||| |||||||| || | || || | || Sbjct 1613 AACATGCAGATCTTCGTCAAGACATTGACAGGGAAAACCATCACTTTGGAGGTCGAAAGC 1672 Query 107612 TGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGA 107671 | || ||| | | | | || ||| ||||||| ||||| ||||| | ||| || Sbjct 1673 TCT-GACACTATTGACAATGTCAAAGCAAAGATTCAAGATAAGGAAGGTATCCCCCCAGA 1731 Query 107672 TCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTA 107731 ||||||||| | || | ||| ||||| ||||| || || | || ||| |||| ||||| Sbjct 1732 CCAGCAGAGATTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCAGAACGTTGGCAGACTA 1791 Query 107732 CAACATTCAAAAGGAGTCTAC 107752 |||||| ||||||||||| || Sbjct 1792 CAACATCCAAAAGGAGTCGAC 1812 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/211 (70%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| ||||| || |||||||| ||||| |||||||| || | || |||| || Sbjct 2071 AATGCAGATTTT-GTTAAAACTTTGACAGGAAAAACCATCACTTTGGAGGTGGAGTCTTC 2129 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | | || || |||||| ||||| || || | || || || Sbjct 2130 TGATACTATTGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGGATCCCACCAGACCA 2189 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| |||||||| |||| || | ||| | || || ||||| Sbjct 2190 GCAGAGGCTCATCTTTGCCGGTAAACAATTGGAAGATGGACGGACACTTGCTGATTACAA 2249 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||| ||||||||||| | ||| | ||| Sbjct 2250 CATTCAGAAGGAGTCTACCCTTCACCTTGTG 2280 >seq10926 Length=11099 Score = 102 bits (112), Expect = 6e-17 Identities = 161/227 (71%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||| |||||||| ||||| ||||||||||| | || || ||| | Sbjct 8482 ATGCAGATTTTTGTGAAAACTTTGACAGGGAAAACCATTACTTTGGAGGTTGAAAGCTCG 8423 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | || || ||||| ||||||||||| | || ||| || Sbjct 8422 -GATACCATTGACAACGTCAAGGCTAAGATCCAAGATAAAGAAGGAATCCCACCGGACCA 8364 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||| || |||||||| || || | || | || || ||||| Sbjct 8363 GCAGAGGCTTATCTTTGCAGGAAAACAGCTTGAAGATGGTCGTACTCTAGCTGATTACAA 8304 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGG 107781 ||| || || |||||||| | ||| ||||| |||| || |||||| Sbjct 8303 CATCCAGAAAGAGTCTACCCTTCACTTGGTGCTGAGGTT--GAGGGG 8259 >seq4586 Length=18721 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/219 (71%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 107549 GTTTAAA-ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGG 107607 ||||| | ||||| || ||||| |||||||| || || || ||||| || |||| || Sbjct 14115 GTTTACAGATGCAGATATTTGTGAAAACTTTGACTGGAAAGACCATCACTCTCGAGGTGG 14056 Query 107608 AG-GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCC 107666 || ||| || || | | | | || || |||||| || |||||||| | ||| Sbjct 14055 AGAGCTCT-GACACCATTGACAATGTTAAGGCCAAGATTCAAGACAAAGAAGGGATTCCC 13997 Query 107667 GTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCG 107726 ||||||||||| || || | ||| || |||||||| ||||||| || | || Sbjct 13996 CCAGATCAGCAGAGGCTGATCTTTGCCGGGAAACAGCTTGAGGACGGTCGTACCCTTGCT 13937 Query 107727 GACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||||||||||| ||||| || || | ||| ||||| Sbjct 13936 GACTACAACATTCAGAAGGAATCGACCCTTCACTTGGTG 13898 >seq16550 Length=20979 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||| |||||||| ||||| |||||||| || | || || ||| | Sbjct 18130 ATGCAGATTTTTGTAAAAACTTTGACAGGGAAAACCATCACTTTGGAGGTTGAAAGCTCG 18071 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | || || ||||||| ||||| ||||| | || || || Sbjct 18070 -GATACTATTGATAATGTCAAGGCAAAGATTCAAGATAAGGAAGGGATCCCACCAGACCA 18012 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||| || || | ||| || || ||||| ||||| | || | || || ||||| Sbjct 18011 ACAGAGGCTGATCTTTGCTGGAAAGCAGCTTGAGGATGGGCGTACCCTTGCTGATTACAA 17952 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||||||||||||| || |||| |||| Sbjct 17951 CATTCAAAAGGAGTCGACTCTGCATTTGGT 17922 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/230 (70%), Gaps = 5/230 (2%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GC 107611 || ||||| || ||||| || ||| | || || || ||||| || ||||| ||| || Sbjct 18588 AATATGCAGATCTTTGTTAAGACTCTCACGGGTAAGACCATCACTCTCGAAGTCGAGAGC 18529 Query 107612 TGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGA 107671 | || ||| ||| | |||| | ||| || || |||||||| | ||| || Sbjct 18528 TCT-GACACTATCGATAATGTAAGGCCAAA-ATCCAAGACAAAGAAGGTATCCCCCCAGA 18471 Query 107672 TCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTA 107731 |||||| || | || | ||| || || ||||| ||||| | || || |||| ||||| Sbjct 18470 TCAGCAAAGGTTGATCTTTGCTGGAAAGCAGCTCGAGGATGGCAGGACCCTGGCAGACTA 18411 Query 107732 CAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGG 107781 ||| ||||||||||| || || | || | |||||||| || |||||| Sbjct 18410 CAATATTCAAAAGGAATCAACCCTCCATCTTGTGTTGAGGTT--GAGGGG 18363 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/112 (77%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 ||||||||||| ||||| | ||| ||||||||||| || || | || || |||| || Sbjct 17788 GATCAGCAGAGGCTTATCTTTGCAGGTAAACAGCTTGAAGATGGCAGGACGTTGGCAGAT 17729 Query 107730 TACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGG 107781 || |||||||| ||||||||||| | || | ||| |||| || |||||| Sbjct 17728 TATAACATTCAGAAGGAGTCTACACTCCATCTTGTGCTGAGGTT--GAGGGG 17679 >seq16006 Length=16259 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAA-CGGAGGCTGG 107614 |||||||| || ||||| ||||| ||||| || ||||| || | || || | ||| Sbjct 13035 ATGCAAATCTTCGTCAAGACTTTGACAGGGAAGACCATCACTTTGGAGGTCGAAAGCTCT 13094 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || || |||||| ||||||||||| | || || || Sbjct 13095 -GACACCATTGACAACGTCAAGGCAAAGATCCAAGATAAAGAAGGGATCCCGCCAGACCA 13153 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || | |||| ||| || || || || ||||| | || || |||| |||||||| Sbjct 13154 GCAAAGGTTGATTTTTGCTGGCAAGCAACTCGAGGATGGCAGGACCCTGGCCGACTACAA 13213 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| ||||| ||||| || ||||| |||| Sbjct 13214 CATCCAAAAAGAGTCCACATTGCATTTGGT 13243 >seq1845 Length=6980 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 || || ||||| | ||| ||||||||||| | |||| || ||||| ||||| ||| Sbjct 3880 GACAAGGAAGGGATCCCCCCAGATCAGCAGAGGTTGATTTTCGCTGGTAAGCAGCTTGAG 3821 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || | || || |||| ||||||||||| |||||||||||||| | ||| |||| Sbjct 3820 GATGGCAGGACCTTGGCAGACTACAACATCCAAAAGGAGTCTACCCTCCACTTGGT 3765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398779209181675