Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq13411 125 1e-23 seq5340 125 1e-23 seq14670 96.9 5e-15 seq6802 96.9 5e-15 seq6637 96.9 5e-15 seq16550 95.1 2e-14 seq10926 93.3 7e-14 seq16006 91.5 2e-13 >seq13411 Length=19963 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| ||||||| ||||| || |||||||| || | || || ||| || Sbjct 11263 TGCAGATCTTCGTAAAAACCTTAACCGGCAAAACAATAACCTTAGAAGTCGAATCCTCCG 11322 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| ||| || || ||| ||||||||||| ||||| || |||| Sbjct 11323 ACACAATCGACAATGTGAAAGCCAAGATTCAAGACAAAGAAGGCATCCCACCAGACCAAC 11382 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || |||||||| |||||| | || || || || ||| | || || |||| Sbjct 11383 AACGTTTAATCTTTGCAGGCAAACAACTTGAAGACGGCAGGACATTAGCCGACTACAATA 11442 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 | ||||||||||| ||| | ||||| || ||||| ||| | || ||| Sbjct 11443 TCCAAAAAGAATCCACTCTTCATTTGGTCTTACGTTTACGTGGCGGT 11489 >seq5340 Length=22833 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| ||||||| ||||| || |||||||| || | || || ||| || Sbjct 14488 TGCAGATCTTCGTAAAAACCTTAACCGGCAAAACAATAACCTTAGAAGTCGAATCCTCCG 14429 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| ||| || || ||| ||||||||||| ||||| || |||| Sbjct 14428 ACACAATCGACAATGTGAAAGCCAAGATTCAAGACAAAGAAGGCATCCCACCAGACCAAC 14369 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || |||||||| |||||| | || || || || ||| | || || |||| Sbjct 14368 AACGTTTAATCTTTGCAGGCAAACAACTTGAAGACGGCAGGACATTAGCCGACTACAATA 14309 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 | ||||||||||| ||| | ||||| || ||||| ||| | || ||| Sbjct 14308 TCCAAAAAGAATCCACTCTTCATTTGGTCTTACGTTTACGTGGCGGT 14262 >seq14670 Length=61898 Score = 96.9 bits (106), Expect = 5e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 146127 AAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 ||||| || ||||| || |||||||||||| | || ||||| || ||||||||||| ||| Sbjct 32030 AAAGAGGGAATTCCGCCTGATCAACAAAGATTGATATTTGCTGGGAAACAATTAGAAGAT 31971 Query 146187 AATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGA 146246 ||||| | | ||||| ||||| ||||| |||||||| | ||| | || || || Sbjct 31970 GGAAGAACACTTGCTGATTACAATATCCAAAAGGAATCGACGCTTCATCTCGTTTTGAGA 31911 Query 146247 TTAAGAGGAGG 146257 || ||||| || Sbjct 31910 TTGAGAGGTGG 31900 >seq6802 Length=18417 Score = 96.9 bits (106), Expect = 5e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 146127 AAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 ||||| || ||||| || |||||||||||| | || ||||| || ||||||||||| ||| Sbjct 11154 AAAGAGGGAATTCCGCCTGATCAACAAAGATTGATATTTGCTGGGAAACAATTAGAAGAT 11213 Query 146187 AATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGA 146246 ||||| | | ||||| ||||| ||||| |||||||| | ||| | || || || Sbjct 11214 GGAAGAACACTTGCTGATTACAATATCCAAAAGGAATCGACGCTTCATCTCGTTTTGAGA 11273 Query 146247 TTAAGAGGAGG 146257 || ||||| || Sbjct 11274 TTGAGAGGTGG 11284 >seq6637 Length=15695 Score = 96.9 bits (106), Expect = 5e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 146127 AAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 ||||| || ||||| || |||||||||||| | || ||||| || ||||||||||| ||| Sbjct 3866 AAAGAGGGAATTCCGCCTGATCAACAAAGATTGATATTTGCTGGGAAACAATTAGAAGAT 3925 Query 146187 AATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGA 146246 ||||| | | ||||| ||||| ||||| |||||||| | ||| | || || || Sbjct 3926 GGAAGAACACTTGCTGATTACAATATCCAAAAGGAATCGACGCTTCATCTCGTTTTGAGA 3985 Query 146247 TTAAGAGGAGG 146257 || ||||| || Sbjct 3986 TTGAGAGGTGG 3996 >seq16550 Length=20979 Score = 95.1 bits (104), Expect = 2e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGA-ACATAAC 146090 |||| || || | ||||| || || ||||| ||||| ||| | || || || | | | Sbjct 17901 TGCAGATCTTTGTGAAAACCTTGACTGGAAAGACAATCACTTTGGAAGTCGAGAGCTCA- 17843 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| || | ||||| || ||||| ||| ||| || || || ||||| ||||| Sbjct 17842 GATACCATCGATAATGTCAAGGCCAAAATCCAAGATAAGGAGGGGATCCCACCAGATCAG 17783 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || || || |||||||||||||| | || ||| || ||||| |||||||||| Sbjct 17782 CAGAGGCTTATCTTTGCAGGTAAACAGCTTGAAGATGGCAGGACGTTGGCAGATTATAAC 17723 Query 146211 ATACAAAAAGAATCGACTATCCAT 146234 || || || || || || ||||| Sbjct 17722 ATTCAGAAGGAGTCTACACTCCAT 17699 Score = 93.3 bits (102), Expect = 7e-14 Identities = 156/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || || || || ||||||||||| ||| | || || ||| | | Sbjct 17673 TGCAGATTTTTGTCAAGACGTTGACCGGAAAAACAATCACTTTAGAGGTTGAAAGTTCTG 17614 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| || ||| || || ||||||||| || ||||| || || | Sbjct 17613 ATACGATTGACAATGTCAAGGCTAAGATTCAGGATAAAGAAGGAATCCCACCAGACCAGC 17554 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| || || |||||||| |||||| | || ||| | || || |||| || || | Sbjct 17553 AAAGGCTTATCTTTGCAGGAAAACAACTCGAAGATGGGCGTACTTTGGCAGACTACAACA 17494 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || || || || || | || || ||| | || || || || || Sbjct 17493 TCCAGAAGGAGTCTACCCTTCACTTGGTACTGCGGTTGAGGGGTGG 17448 >seq10926 Length=11099 Score = 93.3 bits (102), Expect = 7e-14 Identities = 156/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || || || || ||||||||||| ||| | || || ||| | | Sbjct 8253 TGCAGATTTTTGTCAAGACGTTGACCGGAAAAACAATCACTTTAGAGGTTGAAAGTTCTG 8194 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| || ||| || || ||||||||| || ||||| || || | Sbjct 8193 ATACGATTGACAATGTCAAGGCTAAGATTCAGGATAAAGAAGGAATCCCACCAGACCAGC 8134 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| || || |||||||| |||||| | || ||| | || || |||| || || | Sbjct 8133 AAAGGCTTATCTTTGCAGGAAAACAACTCGAAGATGGGCGTACTTTGGCAGACTACAACA 8074 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || || || || || | || || ||| | || || || || || Sbjct 8073 TCCAGAAGGAGTCTACCCTTCACTTGGTACTGCGGTTGAGGGGTGG 8028 >seq16006 Length=16259 Score = 91.5 bits (100), Expect = 2e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | ||||| || ||||||||||| || ||| | || || ||| | | Sbjct 13264 TGCAGATATTTGTGAAAACCTTGACAGGAAAAACCATCACTTTAGAGGTTGAAAGTTCTG 13323 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | || || || ||| || || |||||| || || || || || || | Sbjct 13324 ATACGATTGACAACGTCAAGGCTAAGATTCAGGATAAAGAGGGGATCCCGCCAGACCAGC 13383 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| || || |||||||| ||||| | || ||| | || || |||| || |||| Sbjct 13384 AAAGGCTTATCTTTGCAGGAAAACAGCTCGAAGATGGGCGTACTCTAGCAGACTACAATA 13443 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | || ||||| || || | ||||| || Sbjct 13444 TCCAGAAAGAGTCTACCCTTCATTTGGT 13471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785969121369000