Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq13411 140 3e-28 seq5340 140 3e-28 >seq13411 Length=19963 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || |||||||| || || ||||||| || ||||||||||| || ||||| ||| Sbjct 11488 CCGCCACGTAAACGTAAGACCAAATGAAGAGTGGATTCTTTTTGGATATTGTAGTCGGCT 11429 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| || |||||| |||||||| || ||| |||| | |||||| || || || || Sbjct 11428 AATGTCCTGCCGTCTTCAAGTTGTTTGCCTGCAAAGATTAAACGTTGTTGGTCTGGTGGG 11369 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 |||||||||||||| ||| || ||| | | || | ||||| | || ||| ||| Sbjct 11368 ATGCCTTCTTTGTCTTGAATCTTGGCTTTCACATTGTCGATTGTGTCGGAGGATTCGACT 11309 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | || |||||||| || ||||||||||| || ||||| Sbjct 11308 TCTAAGGTTATTGTTTTGCCGGTTAAGGTTTTTACGAAGATCTGCAT 11262 >seq5340 Length=22833 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || |||||||| || || ||||||| || ||||||||||| || ||||| ||| Sbjct 14263 CCGCCACGTAAACGTAAGACCAAATGAAGAGTGGATTCTTTTTGGATATTGTAGTCGGCT 14322 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| || |||||| |||||||| || ||| |||| | |||||| || || || || Sbjct 14323 AATGTCCTGCCGTCTTCAAGTTGTTTGCCTGCAAAGATTAAACGTTGTTGGTCTGGTGGG 14382 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 |||||||||||||| ||| || ||| | | || | ||||| | || ||| ||| Sbjct 14383 ATGCCTTCTTTGTCTTGAATCTTGGCTTTCACATTGTCGATTGTGTCGGAGGATTCGACT 14442 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | || |||||||| || ||||||||||| || ||||| Sbjct 14443 TCTAAGGTTATTGTTTTGCCGGTTAAGGTTTTTACGAAGATCTGCAT 14489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488421405990000