Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq13411 138 7e-28 seq5340 138 7e-28 seq4586 111 1e-19 seq5280 102 5e-17 seq8384 91.5 1e-13 seq7910 91.5 1e-13 seq4675 91.5 1e-13 seq16550 89.7 3e-13 seq16006 89.7 3e-13 seq8889 89.7 3e-13 >seq13411 Length=19963 Score = 138 bits (152), Expect = 7e-28 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| || | |||||||| |||||||| |||||| |||||||| || ||||| |||| Sbjct 11490 CACCGCCACGTAAACGTAAGACCAAATGAAGAGTGGATTCTTTTTGGATATTGTAGTCGG 11431 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | ||| | |||| || | |||||| || ||||| || ||||| || || ||| | | Sbjct 11430 CTAATGTCCTGCCGTCTTCAAGTTGTTTGCCTGCAAAGATTAAACGTTGTTGGTCTGGTG 11371 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||||||||| ||| || |||| |||| ||| | |||||| ||||| Sbjct 11370 GGATGCCTTCTTTGTCTTGAATCTTGGCTTTC-ACATTGTCGATTGTGTCGGAGGATTCG 11312 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || ||||| || ||||| |||||||| ||||||||||| Sbjct 11311 ACTTCTAAGGTTATTGTTTTGCCGGTTAAGGTTTTTACGAAGATCTGCAT 11262 >seq5340 Length=22833 Score = 138 bits (152), Expect = 7e-28 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| || | |||||||| |||||||| |||||| |||||||| || ||||| |||| Sbjct 14261 CACCGCCACGTAAACGTAAGACCAAATGAAGAGTGGATTCTTTTTGGATATTGTAGTCGG 14320 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | ||| | |||| || | |||||| || ||||| || ||||| || || ||| | | Sbjct 14321 CTAATGTCCTGCCGTCTTCAAGTTGTTTGCCTGCAAAGATTAAACGTTGTTGGTCTGGTG 14380 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||||||||| ||| || |||| |||| ||| | |||||| ||||| Sbjct 14381 GGATGCCTTCTTTGTCTTGAATCTTGGCTTTC-ACATTGTCGATTGTGTCGGAGGATTCG 14439 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || ||||| || ||||| |||||||| ||||||||||| Sbjct 14440 ACTTCTAAGGTTATTGTTTTGCCGGTTAAGGTTTTTACGAAGATCTGCAT 14489 >seq4586 Length=18721 Score = 111 bits (122), Expect = 1e-19 Identities = 166/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| |||||||| | |||||| || || || || || || |||||||| || | Sbjct 13880 ACCACCCCTCAAACGAAGCACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGC 13939 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || |||| || | ||||| |||||||| |||| | |||||||||| | || Sbjct 13940 AAGGGTACGACCGTCCTCAAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGATCTGGGGG 13999 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||||||||||| ||| || | | ||||| ||| | |||||| ||| | Sbjct 14000 AATCCCTTCTTTGTCTTGAATCTT-GGCCTTAACATTGTCAATGGTGTCAGAGCT---CT 14055 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || | ||||| || || || || || ||||| ||||| |||||||| Sbjct 14056 CCACCTCGAGAGTGATGGTCTTTCCAGTCAAAGTTTTCACAAATATCTGCAT 14107 >seq5280 Length=29361 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||| | ||| || ||| ||| || || || |||||||| | Sbjct 6999 ACCACCACGAAGACGGAGCACAAGATGAAGGGTGGACTCCTTCTGAATATTGTAATCTGC 6940 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||| ||| | || ||||||||||| || || || ||||| | |||||||||| | || Sbjct 6939 AAGTGTACGTCCATCTTCCAATTGTTTCCCAGCGAAGATCAACCTCTGCTGATCTGGTGG 6880 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || || || ||| || | | |||| ||| | || || || |||| Sbjct 6879 GATCCCCTCCTTATCCTGAATCTT-GGCCTTGACATTGTCAATCGTATCAGAAGACTCCA 6821 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| ||||| ||||| || || || ||||| ||||||||| Sbjct 6820 CCTCCAAAGTGATGGTTTTCCCTGTCAAGGTCTTCACAAAAATCTGCATA 6771 Score = 82.4 bits (90), Expect = 5e-11 Identities = 162/236 (69%), Gaps = 8/236 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || ||||| | | ||| | ||| || || || ||||| || ||||| || | Sbjct 6543 ACCTCCCCTCAACCTCAGCACAAGATGGAGGGTCGATTCCTTTTGGATATTGTAGTCTGC 6484 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | |||||| | || || | || ||||||||||| || | | |||||| ||| | || Sbjct 6483 CAATGTGCGACCATCCTCAAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCTGGGGG 6424 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||||| ||||| |||||| | | ||||| || | ||| || ||| | Sbjct 6423 GATCCCTTCCTTGTCTTGGATTTTC-GCCTTAACATTATCGATGGTATCTGAGCT---CT 6368 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTT 33753 | || |||| ||||| || ||||| || | ||||| ||||||||||||||| || Sbjct 6367 CGACTTCAAGAGTGATGGTCTTACCAGTGAGAGTTTTAACAAAGATCTGCATATTT 6312 >seq8384 Length=24589 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/199 (71%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || ||||| ||||||||||||| | || || |||| || | || ||||| ||||| Sbjct 3548 TCCTTTTGAATGTTGTAATCGGCCAAGGTACGACCGTCCTCGAGCTGCTTTCCAGCAAAG 3489 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 ||||| | |||||| ||| | || | ||||||||||| |||||| | | ||||| Sbjct 3488 ATCAACCTCTGCTGGTCTGGGGGGATCCCTTCTTTGTCTTGGATTTTC-GCCTTAACATT 3430 Query 33679 GTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTT 33734 || | ||||| ||| || || || | ||||| |||||||| || | || || Sbjct 3429 ATCGATAGTGTCAGAGCT---CTCGACTTCGAGAGTGATGGTTTTACCAGTAAGAGTCTT 3373 Query 33735 TACAAAGATCTGCATAGTT 33753 ||||||||||||||| || Sbjct 3372 AACAAAGATCTGCATATTT 3354 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||||| || ||| ||| || || ||||||||||| | Sbjct 3813 ACCACCACGGAGACGGAGAACCAAATGCAGTGTGGACTCCTTCTGAATGTTGTAATCAGC 3754 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || ||| | || || | || || || || |||||||| | |||||| ||| | || Sbjct 3753 AAGGGTACGTCCATCCTCAAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCTGGGGG 3694 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTC---GCTTGATTC 33698 | |||||||||||| || || || | || | ||||| ||| || Sbjct 3693 GATACCTTCTTTGTCCTGGATCTTAGCCTTGACGTTATCGATTGTGTCAGAGCT---CTC 3637 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | ||||| ||||| ||||| | || || ||||||||||||||| Sbjct 3636 GACTTCCAAAGTGATGGTTTTTCCTGTGAGAGTCTTAACAAAGATCTGCATA 3585 >seq7910 Length=9655 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/199 (71%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || ||||| ||||||||||||| | || || |||| || | || ||||| ||||| Sbjct 1784 TCCTTTTGAATGTTGTAATCGGCCAAGGTACGACCGTCCTCGAGCTGCTTTCCAGCAAAG 1725 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 ||||| | |||||| ||| | || | ||||||||||| |||||| | | ||||| Sbjct 1724 ATCAACCTCTGCTGGTCTGGGGGGATCCCTTCTTTGTCTTGGATTTTC-GCCTTAACATT 1666 Query 33679 GTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTT 33734 || | ||||| ||| || || || | ||||| |||||||| || | || || Sbjct 1665 ATCGATAGTGTCAGAGCT---CTCGACTTCGAGAGTGATGGTTTTACCAGTAAGAGTCTT 1609 Query 33735 TACAAAGATCTGCATAGTT 33753 ||||||||||||||| || Sbjct 1608 AACAAAGATCTGCATATTT 1590 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||||| || ||| ||| || || ||||||||||| | Sbjct 2049 ACCACCACGGAGACGGAGAACCAAATGCAGTGTGGACTCCTTCTGAATGTTGTAATCAGC 1990 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || ||| | || || | || || || || |||||||| | |||||| ||| | || Sbjct 1989 AAGGGTACGTCCATCCTCAAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCTGGGGG 1930 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTC---GCTTGATTC 33698 | |||||||||||| || || || | || | ||||| ||| || Sbjct 1929 GATACCTTCTTTGTCCTGGATCTTAGCCTTGACGTTATCGATTGTGTCAGAGCT---CTC 1873 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | ||||| ||||| ||||| | || || ||||||||||||||| Sbjct 1872 GACTTCCAAAGTGATGGTTTTTCCTGTGAGAGTCTTAACAAAGATCTGCATA 1821 >seq4675 Length=16269 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/199 (71%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || ||||| ||||||||||||| | || || |||| || | || ||||| ||||| Sbjct 15935 TCCTTTTGAATGTTGTAATCGGCCAAGGTACGACCGTCCTCGAGCTGCTTTCCAGCAAAG 15876 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 ||||| | |||||| ||| | || | ||||||||||| |||||| | | ||||| Sbjct 15875 ATCAACCTCTGCTGGTCTGGGGGGATCCCTTCTTTGTCTTGGATTTTC-GCCTTAACATT 15817 Query 33679 GTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTT 33734 || | ||||| ||| || || || | ||||| |||||||| || | || || Sbjct 15816 ATCGATAGTGTCAGAGCT---CTCGACTTCGAGAGTGATGGTTTTACCAGTAAGAGTCTT 15760 Query 33735 TACAAAGATCTGCATAGTT 33753 ||||||||||||||| || Sbjct 15759 AACAAAGATCTGCATATTT 15741 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||||| || ||| ||| || || ||||||||||| | Sbjct 16200 ACCACCACGGAGACGGAGAACCAAATGCAGTGTGGACTCCTTCTGAATGTTGTAATCAGC 16141 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || ||| | || || | || || || || |||||||| | |||||| ||| | || Sbjct 16140 AAGGGTACGTCCATCCTCAAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCTGGGGG 16081 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTC---GCTTGATTC 33698 | |||||||||||| || || || | || | ||||| ||| || Sbjct 16080 GATACCTTCTTTGTCCTGGATCTTAGCCTTGACGTTATCGATTGTGTCAGAGCT---CTC 16024 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | ||||| ||||| ||||| | || || ||||||||||||||| Sbjct 16023 GACTTCCAAAGTGATGGTTTTTCCTGTGAGAGTCTTAACAAAGATCTGCATA 15972 >seq16550 Length=20979 Score = 89.7 bits (98), Expect = 3e-13 Identities = 162/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||||| ||||| ||| ||||| ||||||||||| | Sbjct 17903 ACCACCACGAAGACGAAGAACCAAATGCAGAGTCGACTCCTTTTGAATGTTGTAATCAGC 17962 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || || | || ||||| ||||| |||| | ||| || ||| | || Sbjct 17963 AAGGGTACGCCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGCCTCTGTTGGTCTGGTGG 18022 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||||| || || ||| || || | |||| || | || || ||| || Sbjct 18023 GATCCCTTCCTTATCTTGAATCTT-TGCCTTGACATTATCAATAGTATCCGAGCT---TT 18078 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | ||||| ||||| ||||| || ||||||||||| ||||||||| Sbjct 18079 CAACCTCCAAAGTGATGGTTTTCCCTGTCAAAGTTTTTACAAAAATCTGCATA 18131 >seq16006 Length=16259 Score = 89.7 bits (98), Expect = 3e-13 Identities = 162/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||||| | ||| ||||||||| |||||||| |||| Sbjct 13262 ACCACCACGGAGACGGAGTACCAAATGCAATGTGGACTCTTTTTGGATGTTGTAGTCGGC 13203 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | | || || | ||| || || ||||||||||| | ||||| ||| |||| Sbjct 13202 CAGGGTCCTGCCATCCTCGAGTTGCTTGCCAGCAAAAATCAACCTTTGCTGGTCTGGCGG 13143 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | |||||||| || || || || | || | ||| | |||||| ||| || Sbjct 13142 GATCCCTTCTTTATCTTGGATCTT-TGCCTTGACGTTGTCAATGGTGTCAGAGCT---TT 13087 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | ||||| || || ||||| || || || || ||||| |||||| Sbjct 13086 CGACCTCCAAAGTGATGGTCTTCCCTGTCAAAGTCTTGACGAAGATTTGCATA 13034 >seq8889 Length=9065 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/193 (72%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || ||||||||||| | ||||| ||| | || ||||||||||| |||||||| Sbjct 2262 CTCCTTCTGAATGTTGTAATCAGCAAGTGTCCGTCCATCTTCCAATTGTTTACCGGCAAA 2203 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | | |||||| ||| | || | || || || || ||| || | | |||| Sbjct 2202 GATGAGCCTCTGCTGGTCTGGTGGGATCCCCTCCTTATCCTGAATCTT-GGCCTTGACAT 2144 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | || || || ||||| || | ||||| ||||| ||||| || ||||| | Sbjct 2143 TGTCAATAGTATCAGAAGACTCCACCTCCAAAGTGATGGTTTTTCCTGTCAAAGTTTTAA 2084 Query 33737 CAAAGATCTGCAT 33749 |||| |||||||| Sbjct 2083 CAAA-ATCTGCAT 2072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328623577944000