Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq20014 583 3e-162 seq2978 495 1e-135 seq2990 405 2e-108 >seq20014 Length=5322 Score = 583 bits (646), Expect = 3e-162 Identities = 722/978 (74%), Gaps = 10/978 (1%) Strand=Plus/Minus Query 19510 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 19569 ||||||| | || ||| | ||||||||||| |||| |||||||| ||||||| Sbjct 1915 TAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGCGTTTTGATGAT 1856 Query 19570 TCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAG 19628 || | || ||| || | |||| || ||||| || |||||||| ||||| |||| Sbjct 1855 CCC-TACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAG 1797 Query 19629 TTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCA 19688 | || |||||||| || || ||||| || || || || |||||||||||||| || | Sbjct 1796 TAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTA 1737 Query 19689 TATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTG 19746 | ||||| ||| | |||| | | ||| || || || | || || |||||||| || Sbjct 1736 TTTCGGGTGCCATTATTCCTACTTCTGCA--GCTATAGGTTTGCATTTTTACCCAATATG 1679 Query 19747 GGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTT 19806 |||||| || ||||||||||| | ||||| || || || | |||| | || | Sbjct 1678 GGAAGCAGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCT 1619 Query 19807 CCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACT 19866 |||||| | |||| | | ||||||||| || |||||||||||||| | || || Sbjct 1618 ACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCT 1559 Query 19867 AGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGT 19926 || ||| | ||||||||| |||||| || || ||||| |||||||| || |||| || Sbjct 1558 GGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGT 1499 Query 19927 CTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCT 19985 ||||| | ||||||| ||||||| || ||||| || |||| ||||||| | || || | Sbjct 1498 -TTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTT 1440 Query 19986 CGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGT 20045 | ||||| ||||||| |||| | |||||||| || || || ||||| || |||||||| | Sbjct 1439 CTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCAT 1380 Query 20046 TCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTT 20105 | |||||||| || || |||||||||||||| || || ||||| ||||| ||||| |||| Sbjct 1379 TTCACATGCTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTT 1320 Query 20106 CGCTTGTTACGTCCTCGCTTG-TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGGT 20164 | | || || | || | ||| | | || || || ||| | ||| | ||| | ||| Sbjct 1319 CTTTGGTAACCT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGGT 1261 Query 20165 TACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGA 20224 |||| || || ||||||||||| || ||||| |||||||||||||| ||||| ||||| Sbjct 1260 TACAGATTCGGTCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCACGGTTATTTTGGC 1201 Query 20225 CGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCT 20284 || |||||||||||||| ||| ||||||||| |||||| |||| |||||||| ||| Sbjct 1200 CGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCT 1141 Query 20285 GCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAAT 20344 || ||||| || ||||| || |||||| |||| || || | || ||||| || || Sbjct 1140 GCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAAC 1081 Query 20345 CTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACT 20404 || || |||||||| || ||||| || | | || | | || ||||| ||| | ||| Sbjct 1080 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGCCGTGTAATTAACACT 1021 Query 20405 TGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCT 20464 |||||||| || | || |||||||| || || | || || ||||||||||| |||||| Sbjct 1020 TGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 961 Query 20465 CATAACTTCCCACTTGAC 20482 || || ||||| || ||| Sbjct 960 CACAATTTCCCTCTAGAC 943 >seq2978 Length=1535 Score = 495 bits (548), Expect = 1e-135 Identities = 663/901 (74%), Gaps = 21/901 (2%) Strand=Plus/Plus Query 19598 TTCATTATTGCATTCATTGCGG-CTCCACCAGTTGACATTGAT-GGCATC-CGCGAACCC 19654 || ||||| || |||||||| | |||| ||||| || |||||| || || || ||||| Sbjct 11 TTTATTATCGCCTTCATTGCTGACTCCTCCAGTAGATATTGATAGGTATTACGTGAACCT 70 Query 19655 G--TATCCGGTAGC-CTTC--TTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGA 19709 | | | | | | ||| ||||||||| ||| || || ||||| ||| | |||| | Sbjct 71 AGTTTTACTGGATCTCTTACTTTTATGGAA-CAATATTATTTCGGGTGCCATTATTCCTA 129 Query 19710 G--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGT-TCACTTGA-T 19765 | ||| || || || | || || |||||||| ||||||| || || |||| | Sbjct 130 CTTCTGCA--GCTATAGGTTTGCATTTTTACCCAATATGGGAAGGCAGCATCTGTTGAAT 187 Query 19766 GAATGGCTCTACAACGGG-GGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCAT 19824 |||||| | ||||| || || || | |||| | || | |||||| | |||| | Sbjct 188 GAATGGTTATACAATAGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGT 247 Query 19825 CTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGAT 19884 | ||||||||| || |||||||||||||| | || || || ||| | |||||||| Sbjct 248 AGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGAT 307 Query 19885 TTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGT 19943 | |||||| || || ||||| |||||||| || |||| || ||||| | ||||||| Sbjct 308 TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGT-TTTCTTGATCTACCCAA 366 Query 19944 TTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACA 20003 ||||||| || ||||| || |||| ||||||| | || || || ||||| ||||||| || Sbjct 367 TTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCA 426 Query 20004 TGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGG 20063 || | |||||||| || || || ||||| || |||||||| || |||||||| || || | Sbjct 427 TGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGCGTAG 486 Query 20064 CTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGC 20123 ||||||||||||| || || ||||| ||||| ||||| ||||| | || || | || | Sbjct 487 CTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCT-CTAGT 545 Query 20124 TTG-TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAA 20182 ||| | | || || || ||| | ||| | ||| | ||||||| || || |||||| Sbjct 546 TTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAA 605 Query 20183 GAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATAC 20242 ||||| || ||||| |||||||||||||| ||||| ||||| || |||||||||||||| Sbjct 606 GAAGAAACTTATAATATCGTAGCCGCTCACGGTTATTTTGGCCGATTGATCTTCCAATAT 665 Query 20243 GCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGG 20302 ||| ||||||||| |||||| |||| |||||||| ||||| ||||| || ||||| Sbjct 666 GCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGT 725 Query 20303 ATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTT 20362 || |||||| |||| || || | || ||||| || || || || |||||||| || Sbjct 726 ATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTC 785 Query 20363 AACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAAT 20422 ||||| || | | || | | || ||||| ||| | ||||||||||| || | || Sbjct 786 AACCAATCAGTAGTTGATAGTCAAGGCCGTGTAATTAACACTTGGGCTGATATCATTAAC 845 Query 20423 CGTGCTAATCTCGGGTTTGAGGTGATGC-ATGAACGGAATGCTCATAACTTCCCACTTGA 20481 |||||||| || || | || || |||| ||||||| |||||||| || ||||| || || Sbjct 846 CGTGCTAACCTTGGTATGGAAGTTATGCAATGAACGTAATGCTCACAATTTCCCTCTAGA 905 Query 20482 C 20482 | Sbjct 906 C 906 >seq2990 Length=15620 Score = 405 bits (448), Expect = 2e-108 Identities = 578/791 (73%), Gaps = 22/791 (3%) Strand=Plus/Plus Query 19510 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 19569 ||||||| | || ||| | ||||||||||| |||| |||||||| ||||||| Sbjct 14835 TAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGCGTTTTGATGAT 14894 Query 19570 TCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAG 19628 || | || ||| || | |||| || ||||| || |||||||| ||||| |||| Sbjct 14895 CCC-TACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAG 14953 Query 19629 TTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCA 19688 | || |||||||| || || ||||| || || || || |||||||||||||| || | Sbjct 14954 TAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTA 15013 Query 19689 TATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTG 19746 | ||||| ||| | |||| | | ||| || || || | || || |||||||| || Sbjct 15014 TTTCGGGTGCCATTATTCCTACTTCTGCA--GCTATAGGTTTGCATTTTTACCCAATATG 15071 Query 19747 GGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTT 19806 |||||| || ||||||||||| | ||||| || || || | |||| | || | Sbjct 15072 GGAAGCAGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCT 15131 Query 19807 CCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGG-AACTTAGCTATCGAC 19865 |||||| | |||| | | ||||||||| || ||||||| ||||||| | || | Sbjct 15132 ACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGGAACTTAGTTTCCGTC 15191 Query 19866 TAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGG 19925 | || ||| | ||||||||| |||||| || || ||||| |||||||| || |||| | Sbjct 15192 TGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTG 15251 Query 19926 TCTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATC 19984 | ||||| | ||||||| ||||||| || ||||| || |||| ||||||| | || || Sbjct 15252 T-TTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATT 15310 Query 19985 TCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCG 20044 || ||||| ||||||| |||| | |||||||| || || || ||||| || |||||||| Sbjct 15311 TCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCA 15370 Query 20045 TTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGT 20104 || |||||||| || || |||||||||||||| || || ||||| ||||| ||||| ||| Sbjct 15371 TTTCACATGCTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGT 15430 Query 20105 TCGCTTGTTACGTCCTCGCTTG-TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGG 20163 || | || || | || | ||| | | || || || ||| | ||| | ||| | || Sbjct 15431 TCTTTGGTAACCT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGG 15489 Query 20164 TTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTC-ATGG-TTACTTT 20221 ||||| || || ||||||||||| || ||||| ||||||||||||| | || ||| ||| Sbjct 15490 TTACAGATTCGGTCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCTACGGTTTATTTT 15549 Query 20222 GGACGT-TTGA-TCTT--CCAATACG-CTT--CTTTCAACAA-TAGCCGTTCTCTAC-AC 20272 || ||| |||| |||| | |||| | ||| || |||||| | |||||| ||| | Sbjct 15550 GGCCGTATTGATTCTTACCTAATATGTCTTAGTTTACAACAACTCTTCGTTCTTTACTAT 15609 Query 20273 TTCTTCCTTGC 20283 |||||||| || Sbjct 15610 TTCTTCCTAGC 15620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148793320609350