Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq20014 572 5e-159 seq2978 480 2e-131 seq2990 392 9e-105 >seq20014 Length=5322 Score = 572 bits (634), Expect = 5e-159 Identities = 717/976 (73%), Gaps = 8/976 (1%) Strand=Plus/Minus Query 28638 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 28697 ||||||| | || ||| | ||||||||||| |||| |||||||| ||||||| Sbjct 1915 TAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGCGTTTTGATGAT 1856 Query 28698 TCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAG 28756 || | || ||| || | |||| || ||||| || |||||||| || || |||| Sbjct 1855 CCC-TACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAG 1797 Query 28757 TTGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCA 28816 | || |||||||| || || |||||||| ||||| ||| || ||||||||||| || | Sbjct 1796 TAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTA 1737 Query 28817 TATCGGGAGCCGTCGTACCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTG 28874 | ||||| ||| | | || | | ||| || || || | || || |||||||| || Sbjct 1736 TTTCGGGTGCCATTATTCCTACTTCTGCA--GCTATAGGTTTGCATTTTTACCCAATATG 1679 Query 28875 GGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTT 28934 |||||| || ||||||||||| | ||||| || || || | |||| | || | Sbjct 1678 GGAAGCAGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCT 1619 Query 28935 CCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACT 28994 |||||| | |||| || | ||||||||| || |||||||||||||| | || || Sbjct 1618 ACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCT 1559 Query 28995 AGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGT 29054 || ||| | || |||||| ||| ||||| |||||||| || ||||| || |||| || Sbjct 1558 GGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGT 1499 Query 29055 TTTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTC 29114 |||| | |||||||| | |||||||| ||| || | |||||| | || ||||| Sbjct 1498 TTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTC 1439 Query 29115 AGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTT 29174 || || ||||||| |||| | || ||||| || || || ||||| || |||||||| || Sbjct 1438 TGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATT 1379 Query 29175 CCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTC 29234 |||||||| ||||| ||||| || ||||| ||||| ||||||||||| ||||| ||||| Sbjct 1378 TCACATGCTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTC 1319 Query 29235 GCTTGTCACGTCCTCGCTTGTGC-GTGAGACGACTGAAGACATCTCTCAGAACTATGGTT 29293 | || || || | | ||| | | || || || ||| | ||| ||| | |||| Sbjct 1318 TTTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGGTT 1260 Query 29294 ACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGAC 29353 ||| || || ||||||||||| |||||||| |||||||||||||||||||| ||||| | Sbjct 1259 ACAGATTCGGTCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCACGGTTATTTTGGCC 1200 Query 29354 GTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTG 29413 | |||||||||||||||||| |||||| || |||||| |||| |||||||| |||| Sbjct 1199 GATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTG 1140 Query 29414 CCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATC 29473 | ||||| || ||||| || |||||| |||| || || | || ||||| || || | Sbjct 1139 CTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACC 1080 Query 29474 TGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTT 29533 | || ||||| || || ||||| || | | || | | || ||||| ||||| |||| Sbjct 1079 TAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGCCGTGTAATTAACACTT 1020 Query 29534 GGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTC 29593 |||||||| | | || || |||||||| || | ||||| |||||||| |||||||||| Sbjct 1019 GGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTC 960 Query 29594 ATAACTTCCCACTTGA 29609 | || ||||| || || Sbjct 959 ACAATTTCCCTCTAGA 944 >seq2978 Length=1535 Score = 480 bits (532), Expect = 2e-131 Identities = 656/899 (73%), Gaps = 19/899 (2%) Strand=Plus/Plus Query 28726 TTCATTATTGCATTCATTGCGG-CACCACCAGTTGACATTGAT-GGCATC-CGCGAACCT 28782 || ||||| || |||||||| | | || ||||| || |||||| || || || |||||| Sbjct 11 TTTATTATCGCCTTCATTGCTGACTCCTCCAGTAGATATTGATAGGTATTACGTGAACCT 70 Query 28783 G---TCGCTGGAAGTCTTC--TCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGA 28837 | ||||| |||| | ||||||| ||| || || ||||| ||| | | || | Sbjct 71 AGTTTTACTGGATCTCTTACTTTTATGGAA-CAATATTATTTCGGGTGCCATTATTCCTA 129 Query 28838 G--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAAT-TCACTTGA-T 28893 | ||| || || || | || || |||||||| ||||||| | || |||| | Sbjct 130 CTTCTGCA--GCTATAGGTTTGCATTTTTACCCAATATGGGAAGGCAGCATCTGTTGAAT 187 Query 28894 GAATGGCTCTACAACGGG-GGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGT 28952 |||||| | ||||| || || || | |||| | || | |||||| | |||| || Sbjct 188 GAATGGTTATACAATAGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGT 247 Query 28953 CTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGAT 29012 | ||||||||| || |||||||||||||| | || || || ||| | || ||||| Sbjct 248 AGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGAT 307 Query 29013 TTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATT 29072 | ||| ||||| |||||||| || ||||| || |||| |||||| | |||||||| | Sbjct 308 TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTACCCAAT 367 Query 29073 CGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACAT 29132 |||||||| ||| || | |||||| | || ||||| || || ||||||| ||| Sbjct 368 TGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCAT 427 Query 29133 GCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGC 29192 | | || ||||| || || || ||||| || |||||||| || |||||||| ||||| || Sbjct 428 GATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGCGTAGC 487 Query 29193 TGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCT 29252 ||| || ||||| ||||| ||||||||||| ||||| ||||| | || || || | | | Sbjct 488 TGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTC-TAGTT 546 Query 29253 TGTGC-GTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAG 29311 || | | || || || ||| | ||| ||| | ||||||| || || ||||||| Sbjct 547 TGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAAG 606 Query 29312 AAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATG 29371 |||| |||||||| |||||||||||||||||||| ||||| || |||||||||||||||| Sbjct 607 AAGAAACTTATAATATCGTAGCCGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATG 666 Query 29372 CTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGA 29431 || |||||| || |||||| |||| |||||||| ||||| ||||| || ||||| | Sbjct 667 CTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTA 726 Query 29432 TTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTA 29491 | |||||| |||| || || | || ||||| || || || || ||||| || || | Sbjct 727 TCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCA 786 Query 29492 ACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATC 29551 |||| || | | || | | || ||||| ||||| |||||||||||| | | || | Sbjct 787 ACCAATCAGTAGTTGATAGTCAAGGCCGTGTAATTAACACTTGGGCTGATATCATTAACC 846 Query 29552 GCGCTAACCTCGGCTTTGAAGTAATGC-ATGAGCGTAATGCTCATAACTTCCCACTTGA 29609 | |||||||| || | ||||| |||| |||| ||||||||||| || ||||| || || Sbjct 847 GTGCTAACCTTGGTATGGAAGTTATGCAATGAACGTAATGCTCACAATTTCCCTCTAGA 905 >seq2990 Length=15620 Score = 392 bits (434), Expect = 9e-105 Identities = 573/790 (73%), Gaps = 20/790 (3%) Strand=Plus/Plus Query 28638 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 28697 ||||||| | || ||| | ||||||||||| |||| |||||||| ||||||| Sbjct 14835 TAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGCGTTTTGATGAT 14894 Query 28698 TCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAG 28756 || | || ||| || | |||| || ||||| || |||||||| || || |||| Sbjct 14895 CCC-TACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAG 14953 Query 28757 TTGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCA 28816 | || |||||||| || || |||||||| ||||| ||| || ||||||||||| || | Sbjct 14954 TAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTA 15013 Query 28817 TATCGGGAGCCGTCGTACCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTG 28874 | ||||| ||| | | || | | ||| || || || | || || |||||||| || Sbjct 15014 TTTCGGGTGCCATTATTCCTACTTCTGCA--GCTATAGGTTTGCATTTTTACCCAATATG 15071 Query 28875 GGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTT 28934 |||||| || ||||||||||| | ||||| || || || | |||| | || | Sbjct 15072 GGAAGCAGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCT 15131 Query 28935 CCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGG-AACTTAGCTATCGAC 28993 |||||| | |||| || | ||||||||| || ||||||| ||||||| | || | Sbjct 15132 ACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGGAACTTAGTTTCCGTC 15191 Query 28994 TAGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGG 29053 | || ||| | || |||||| ||| ||||| |||||||| || ||||| || |||| | Sbjct 15192 TGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTG 15251 Query 29054 TTTTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTT 29113 ||||| | |||||||| | |||||||| ||| || | |||||| | || |||| Sbjct 15252 TTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTT 15311 Query 29114 CAGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGT 29173 | || || ||||||| |||| | || ||||| || || || ||||| || |||||||| | Sbjct 15312 CTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCAT 15371 Query 29174 TCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTT 29233 | |||||||| ||||| ||||| || ||||| ||||| ||||||||||| ||||| |||| Sbjct 15372 TTCACATGCTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTT 15431 Query 29234 CGCTTGTCACGTCCTCGCTTG-TGCGTGAGACGACTGAAGACATCTCTCAGAACTATGGT 29292 | | || || | || | ||| | | || || || ||| | ||| ||| | ||| Sbjct 15432 CTTTGGTAACCT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGGT 15490 Query 29293 TACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTC-ACGG-TTACTTTG 29350 |||| || || ||||||||||| |||||||| ||||||||||||| |||| ||| |||| Sbjct 15491 TACAGATTCGGTCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCTACGGTTTATTTTG 15550 Query 29351 GACGT-TTGA-TCTT--CCAATATG-CTT--CTTTCAATAA-TAGCCGTTCTCTAC-ACT 29401 | ||| |||| |||| | |||||| ||| || ||| || | |||||| ||| | | Sbjct 15551 GCCGTATTGATTCTTACCTAATATGTCTTAGTTTACAACAACTCTTCGTTCTTTACTATT 15610 Query 29402 TCTTCCTTGC 29411 ||||||| || Sbjct 15611 TCTTCCTAGC 15620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146630636295950