Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13]
20,075 sequences; 326,165,195 total letters
Query= NC_025464.1
Length=44147
Score E
Sequences producing significant alignments: (Bits) Value
seq20014 621 1e-173
seq2978 508 2e-139
seq2990 450 4e-122
>seq20014
Length=5322
Score = 621 bits (688), Expect = 1e-173
Identities = 737/989 (75%), Gaps = 10/989 (1%)
Strand=Plus/Minus
Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783
|| ||| ||||| ||||||| || || ||||||||||| || || |||||||| ||
Sbjct 1920 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGCGTTTTG 1861
Query 18784 ATGATTCCGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCAC 18841
||||| || | || ||| | || ||| | ||| || ||||| |||||||||||||| |
Sbjct 1860 ATGATCCC-TACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTC 1803
Query 18842 CTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACA 18901
|||| ||||| |||||||| || || || |||||| | || ||| |||||||||||||
Sbjct 1802 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 1743
Query 18902 ACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCC 18959
| || || ||||| ||| | |||| | | ||| || || || | || || |||||
Sbjct 1742 ATATTATTTCGGGTGCCATTATTCCTACTTCTGCA--GCTATAGGTTTGCATTTTTACCC 1685
Query 18960 AATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGT 19019
||| |||||||| || ||||||||||| | ||||| || || || | |||| |
Sbjct 1684 AATATGGGAAGCAGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAAT 1625
Query 19020 GGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTA 19079
|| | |||||| | |||| || | ||||||||| || |||||||||||||| |
Sbjct 1624 TGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTT 1565
Query 19080 TCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTC 19139
|| || || ||||| ||||||||| |||||| || |||||||||||||| || || |
Sbjct 1564 CCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGAC 1505
Query 19140 TGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGG 19199
||| || ||| | |||| ||| |||||||||| |||| || | ||||||| | ||
Sbjct 1504 TGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGG 1445
Query 19200 TATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCA 19259
||| |||||| ||||||| |||| |||||||||||||||| || |||||||| |||||
Sbjct 1444 AATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCA 1385
Query 19260 CCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCA 19319
||| || |||||||| || || |||||||| |||||||| || ||||||||||| |||||
Sbjct 1384 CCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCA 1325
Query 19320 CGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACT 19378
||||| | || || | || | ||| | | ||||| || ||| | | |||| |||
Sbjct 1324 TGGTTCTTTGGTAACCT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACG 1266
Query 19379 ATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATT 19438
| || |||| || || ||||||||||| |||||||| || || || ||||| || ||||
Sbjct 1265 AAGGTTACAGATTCGGTCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCACGGTTATT 1206
Query 19439 TTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTT 19498
|||| || | || ||||| || || |||||||| |||||| ||||||||||
Sbjct 1205 TTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCC 1146
Query 19499 TGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCAT 19558
| |||||||||||||| || || || ||||| | || | || | ||||| ||||| |
Sbjct 1145 TAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTT 1086
Query 19559 TCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTG 19618
||||| | ||||| || || || ||||| || | |||| | | || ||||| |||
Sbjct 1085 TCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGCCGTGTAATTA 1026
Query 19619 ATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTA 19678
| ||||||||||| || | || ||||||||||| || | || || ||||| |||||||
Sbjct 1025 ACACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 966
Query 19679 ATGCTCATAACTTCCCACTTGATTTGGCT 19707
||||||| || ||||| || || || |||
Sbjct 965 ATGCTCACAATTTCCCTCTAGACTTAGCT 937
>seq2978
Length=1535
Score = 508 bits (562), Expect = 2e-139
Identities = 667/907 (74%), Gaps = 19/907 (2%)
Strand=Plus/Plus
Query 18816 TTTCATTATTGCCTTCATTGCTG-CACCTCCTGTAGACATTGAT-GGCATC-CGCGAGCC 18872
||| ||||| ||||||||||||| | ||||| ||||| |||||| || || || || ||
Sbjct 10 TTTTATTATCGCCTTCATTGCTGACTCCTCCAGTAGATATTGATAGGTATTACGTGAACC 69
Query 18873 TG---TTGCAGGCAGTCTTC--TTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCG 18927
| || | || |||| ||||||||| ||| || || ||||| ||| | ||||
Sbjct 70 TAGTTTTACTGGATCTCTTACTTTTATGGAA-CAATATTATTTCGGGTGCCATTATTCCT 128
Query 18928 AG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAAT-TCACTTGA- 18983
| | ||| || || || | || || |||||||| ||||||| | || ||||
Sbjct 129 ACTTCTGCA--GCTATAGGTTTGCATTTTTACCCAATATGGGAAGGCAGCATCTGTTGAA 186
Query 18984 TGAATGGCTCTACAACGGG-GGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCG 19042
||||||| | ||||| || || || | |||| | || | |||||| | |||| |
Sbjct 187 TGAATGGTTATACAATAGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTG 246
Query 19043 TCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGA 19102
| | ||||||||| || |||||||||||||| | || || || ||||| |||||||
Sbjct 247 TAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGA 306
Query 19103 TTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCAT 19162
|| |||||| || |||||||||||||| || || |||| || ||| | |||| |||
Sbjct 307 TTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTACCCAA 366
Query 19163 TTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACA 19222
|||||||||| |||| || | ||||||| | || ||| |||||| ||||||| ||
Sbjct 367 TTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCA 426
Query 19223 TGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCG 19282
|| |||||||||||||||| || |||||||| |||||||| || |||||||| || || |
Sbjct 427 TGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGCGTAG 486
Query 19283 CTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGC 19342
||||||| |||||||| || ||||||||||| ||||| ||||| | || || | || |
Sbjct 487 CTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCT-CTAGT 545
Query 19343 TTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTACAAGTTTGGGCAAGAA 19401
||| | | ||||| || ||| | | |||| ||| | || |||| || || ||||||
Sbjct 546 TTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAA 605
Query 19402 GAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTTTCCAGTAC 19461
||||| |||||||| || || || ||||| || |||||||| || | || ||||| ||
Sbjct 606 GAAGAAACTTATAATATCGTAGCCGCTCACGGTTATTTTGGCCGATTGATCTTCCAATAT 665
Query 19462 GCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGC 19521
|| |||||||| |||||| |||||||||| | |||||||||||||| || ||
Sbjct 666 GCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGT 725
Query 19522 ATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAATGGCTTTAACTTT 19581
|| ||||| | || | || | ||||| ||||| |||||| | ||||| || || ||
Sbjct 726 ATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTC 785
Query 19582 AACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAAT 19641
||||| || | |||| | | || ||||| ||| | ||||||||||| || | ||
Sbjct 786 AACCAATCAGTAGTTGATAGTCAAGGCCGTGTAATTAACACTTGGGCTGATATCATTAAC 845
Query 19642 CGTGCTAACCTCGGCTTTGAGGTAATGC-ACGAACGTAATGCTCATAACTTCCCACTTGA 19700
||||||||||| || | || || |||| | |||||||||||||| || ||||| || ||
Sbjct 846 CGTGCTAACCTTGGTATGGAAGTTATGCAATGAACGTAATGCTCACAATTTCCCTCTAGA 905
Query 19701 TTTGGCT 19707
|| |||
Sbjct 906 CTTAGCT 912
>seq2990
Length=15620
Score = 450 bits (498), Expect = 4e-122
Identities = 546/730 (75%), Gaps = 13/730 (2%)
Strand=Plus/Plus
Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783
|| ||| ||||| ||||||| || || ||||||||||| || || |||||||| ||
Sbjct 14830 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGCGTTTTG 14889
Query 18784 ATGATTCCGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCAC 18841
||||| || | || ||| | || ||| | ||| || ||||| |||||||||||||| |
Sbjct 14890 ATGATCCC-TACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTC 14947
Query 18842 CTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACA 18901
|||| ||||| |||||||| || || || |||||| | || ||| |||||||||||||
Sbjct 14948 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 15007
Query 18902 ACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCC 18959
| || || ||||| ||| | |||| | | ||| || || || | || || |||||
Sbjct 15008 ATATTATTTCGGGTGCCATTATTCCTACTTCTGCA--GCTATAGGTTTGCATTTTTACCC 15065
Query 18960 AATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGT 19019
||| |||||||| || ||||||||||| | ||||| || || || | |||| |
Sbjct 15066 AATATGGGAAGCAGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAAT 15125
Query 19020 GGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGG-AACTTAGCT 19078
|| | |||||| | |||| || | ||||||||| || ||||||| ||||||| |
Sbjct 15126 TGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGGAACTTAGTT 15185
Query 19079 ATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCT 19138
|| || || ||||| ||||||||| |||||| || |||||||||||||| || ||
Sbjct 15186 TCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGA 15245
Query 19139 CTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGG 19198
|||| || ||| | |||| ||| |||||||||| |||| || | ||||||| | |
Sbjct 15246 CTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAG 15305
Query 19199 GTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGC 19258
| ||| |||||| ||||||| |||| |||||||||||||||| || |||||||| ||||
Sbjct 15306 GAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGC 15365
Query 19259 ACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGC 19318
|||| || |||||||| || || |||||||| |||||||| || ||||||||||| ||||
Sbjct 15366 ACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGC 15425
Query 19319 ACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAAC 19377
| ||||| | || || | || | ||| | | ||||| || ||| | | |||| |||
Sbjct 15426 ATGGTTCTTTGGTAACCT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAAC 15484
Query 19378 TATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTC-ATGG-GT 19435
| || |||| || || ||||||||||| |||||||| || || || |||| | || |
Sbjct 15485 GAAGGTTACAGATTCGGTCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCTACGGTTT 15544
Query 19436 ATTTTGGTCG 19445
||||||| ||
Sbjct 15545 ATTTTGGCCG 15554
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 141115151449350
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