Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq16550 100 3e-16 seq13411 98.7 9e-16 seq5340 98.7 9e-16 seq8384 91.5 1e-13 seq7910 91.5 1e-13 seq4675 91.5 1e-13 seq10926 84.2 2e-11 seq4586 84.2 2e-11 seq16006 82.4 7e-11 >seq16550 Length=20979 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||| | | ||||| |||||||||||||| || | ||||||| ||| || Sbjct 17921 AACCAAATGCAGAGTCGACTCCTTTTGAATGTTGTAATCAGCAAGGGTACGCCCATCCTC 17980 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||||| || || | | |||| || | |||||| ||||| || || ||||| ||||| Sbjct 17981 AAGCTGCTTTCCAGCAAAGATCAGCCTCTGTTGGTCTGGTGGGATCCCTTCCTTATCTTG 18040 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| ||| || | | || | |||||| | || || || | || | ||||| Sbjct 18041 AATCTTTGCCTTGACATTATCAATAGTATCCGAGCTTTCAACCTCCAAAGTGATGGTTTT 18100 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||| |||||||| ||||||||||| Sbjct 18101 CCCTGTCAAAGTTTTTACAAAAATCTGCAT 18130 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| |||| ||||| || | | | ||||| || || ||||||||||| || ||||| Sbjct 17456 CAACCGCAGTACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCCAAAGTACG 17515 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 | ||||||||| ||||| || | | |||| || | || || ||||| || || ||||| Sbjct 17516 CCCATCTTCGAGTTGTTTTCCTGCAAAGATAAGCCTTTGCTGGTCTGGTGGGATTCCTTC 17575 Query 132025 TTTATC 132030 |||||| Sbjct 17576 TTTATC 17581 >seq13411 Length=19963 Score = 98.7 bits (108), Expect = 9e-16 Identities = 157/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCG-CTCATGG 131960 ||| || || || |||||||| | | || |||||||| || ||||||||| || ||| Sbjct 11483 ACGTAAACGTAAGACCAAATGAAGAGTGGATTCTTTTTGGATATTGTAGTCGGCTAATGT 11424 Query 131961 TACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGC 132020 || ||||| || ||||| || | | |||||| ||| ||||| ||||| || |||| Sbjct 11423 CCTGCCG-TCTTCAAGTTGTTTGCCTGCAAAGATTAAACGTTGTTGGTCTGGTGGGATGC 11365 Query 132021 CTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGA 132080 ||||||| || ||| || ||||| | || | || |||| | || ||||| | Sbjct 11364 CTTCTTTGTCTTGAATCTTGGCTTTCACATTGTCGATTGTGTCGGAGGATTCGACTTCTA 11305 Query 132081 CCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| || || | ||||||| ||| |||||||| Sbjct 11304 AGGTTATTGTTTTGCCGGTTAAGGTTTTTACGAAGATCTGCAT 11262 >seq5340 Length=22833 Score = 98.7 bits (108), Expect = 9e-16 Identities = 157/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCG-CTCATGG 131960 ||| || || || |||||||| | | || |||||||| || ||||||||| || ||| Sbjct 14268 ACGTAAACGTAAGACCAAATGAAGAGTGGATTCTTTTTGGATATTGTAGTCGGCTAATGT 14327 Query 131961 TACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGC 132020 || ||||| || ||||| || | | |||||| ||| ||||| ||||| || |||| Sbjct 14328 CCTGCCG-TCTTCAAGTTGTTTGCCTGCAAAGATTAAACGTTGTTGGTCTGGTGGGATGC 14386 Query 132021 CTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGA 132080 ||||||| || ||| || ||||| | || | || |||| | || ||||| | Sbjct 14387 CTTCTTTGTCTTGAATCTTGGCTTTCACATTGTCGATTGTGTCGGAGGATTCGACTTCTA 14446 Query 132081 CCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| || || | ||||||| ||| |||||||| Sbjct 14447 AGGTTATTGTTTTGCCGGTTAAGGTTTTTACGAAGATCTGCAT 14489 >seq8384 Length=24589 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||| | ||| | | |||| || |||||||||||||| ||| || |||||| || || Sbjct 3567 AACAAGATGGAGGGTTGATTCCTTTTGAATGTTGTAATCGGCCAAGGTACGACCGTCCTC 3508 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 |||||| || || | | |||| | | ||| || ||||| || || |||||||| || Sbjct 3507 GAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATCCCTTCTTTGTCTTG 3448 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||||| || | | || | ||| || | ||| ||||||| || | ||||| Sbjct 3447 GATTTTCGCCTTAACATTATCGATAGTGTCAGAGCTCTCGACTTCGAGAGTGATGGTTTT 3388 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||| ||||| || | || |||||||| Sbjct 3387 ACCAGTAAGAGTCTTAACAAAGATCTGCAT 3358 >seq7910 Length=9655 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||| | ||| | | |||| || |||||||||||||| ||| || |||||| || || Sbjct 1803 AACAAGATGGAGGGTTGATTCCTTTTGAATGTTGTAATCGGCCAAGGTACGACCGTCCTC 1744 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 |||||| || || | | |||| | | ||| || ||||| || || |||||||| || Sbjct 1743 GAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATCCCTTCTTTGTCTTG 1684 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||||| || | | || | ||| || | ||| ||||||| || | ||||| Sbjct 1683 GATTTTCGCCTTAACATTATCGATAGTGTCAGAGCTCTCGACTTCGAGAGTGATGGTTTT 1624 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||| ||||| || | || |||||||| Sbjct 1623 ACCAGTAAGAGTCTTAACAAAGATCTGCAT 1594 >seq4675 Length=16269 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||| | ||| | | |||| || |||||||||||||| ||| || |||||| || || Sbjct 15954 AACAAGATGGAGGGTTGATTCCTTTTGAATGTTGTAATCGGCCAAGGTACGACCGTCCTC 15895 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 |||||| || || | | |||| | | ||| || ||||| || || |||||||| || Sbjct 15894 GAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATCCCTTCTTTGTCTTG 15835 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||||| || | | || | ||| || | ||| ||||||| || | ||||| Sbjct 15834 GATTTTCGCCTTAACATTATCGATAGTGTCAGAGCTCTCGACTTCGAGAGTGATGGTTTT 15775 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||| ||||| || | || |||||||| Sbjct 15774 ACCAGTAAGAGTCTTAACAAAGATCTGCAT 15745 >seq10926 Length=11099 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| |||| ||||| || | | | ||||| || || ||||||||||| || ||||| Sbjct 8036 CAACCGCAGTACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCCAAAGTACG 8095 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 | ||||||||| ||||| || | | |||| || | || || ||||| || || ||||| Sbjct 8096 CCCATCTTCGAGTTGTTTTCCTGCAAAGATAAGCCTTTGCTGGTCTGGTGGGATTCCTTC 8155 Query 132025 TTTATC 132030 |||||| Sbjct 8156 TTTATC 8161 >seq4586 Length=18721 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | || || || |||||||||||||| | |||||| || || Sbjct 13899 ACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGCAAGGGTACGACCGTCCTCA 13958 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 |||||||| |||| | |||| || | ||| |||||||| || || |||||||| || | Sbjct 13959 AGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATCCCTTCTTTGTCTTGA 14018 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || || | | || | || || | |||||| |||| || | || || Sbjct 14019 ATCTTGGCCTTAACATTGTCAATGGTGTCAGAGCTCTCCACCTCGAGAGTGATGGTCTTT 14078 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||| |||||| | || |||||||| Sbjct 14079 CCAGTCAAAGTTTTCACAAATATCTGCAT 14107 >seq16006 Length=16259 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/117 (77%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTC 131973 |||||||| | | | |||||||| || || |||||||| ||| | |||||| |||||| Sbjct 13471 ACCAAATGAAGGGTAGACTCTTTCTGGATATTGTAGTCTGCT-AGAGTACGCCCATCTTC 13413 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||||||||| || | | |||| || | || || ||||| || || || |||||||| Sbjct 13412 GAGCTGTTTTCCTGCAAAGATAAGCCTTTGCTGGTCTGGCGGGATCCCCTCTTTATC 13356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476491600377000