Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq13411 107 2e-18 seq5340 107 2e-18 seq16006 102 7e-17 seq14670 96.9 3e-15 seq6802 96.9 3e-15 seq6637 96.9 3e-15 seq16550 95.1 1e-14 >seq13411 Length=19963 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | || |||||||| |||||||| ||| | || || | ||||||||| | Sbjct 11258 CAAAATGCAGATCTTCGTAAAAACCTTAACCGGCAAAACAATAACCTTAGAAGTCGAATC 11317 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | ||| || ||||| | || ||| || ||| || ||||| || || || || || Sbjct 11318 CTCCGACACAATCGACAATGTGAAAGCCAAGATTCAAGACAAAGAAGGCATCCCACCAGA 11377 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 || ||| | | || | | ||||||||||| ||||| | || | | ||| || Sbjct 11378 CCAACAACGTTTAATCTTTGCAGGCAAACAACTTGAAGACGGCAGGACATTAGCCGACTA 11437 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 |||||| |||||||||||||| ||||||| || ||| Sbjct 11438 CAATATCCAAAAAGAATCCACTCTTCATTTGGTCTTA 11474 >seq5340 Length=22833 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | || |||||||| |||||||| ||| | || || | ||||||||| | Sbjct 14493 CAAAATGCAGATCTTCGTAAAAACCTTAACCGGCAAAACAATAACCTTAGAAGTCGAATC 14434 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | ||| || ||||| | || ||| || ||| || ||||| || || || || || Sbjct 14433 CTCCGACACAATCGACAATGTGAAAGCCAAGATTCAAGACAAAGAAGGCATCCCACCAGA 14374 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 || ||| | | || | | ||||||||||| ||||| | || | | ||| || Sbjct 14373 CCAACAACGTTTAATCTTTGCAGGCAAACAACTTGAAGACGGCAGGACATTAGCCGACTA 14314 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 |||||| |||||||||||||| ||||||| || ||| Sbjct 14313 CAATATCCAAAAAGAATCCACTCTTCATTTGGTCTTA 14277 >seq16006 Length=16259 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| || || |||||| | ||||| | || || ||| Sbjct 13263 ATGCAGATATTTGTGAAAACCTTGACAGGAAAAACCATCACTTTAGAGGTTGAAAGTTCT 13322 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || || ||| ||||||||||| || ||||| || ||| Sbjct 13323 GATACGATTGACAACGTCAAGGCTAAGATTCAGGATAAAGAGGGGATCCCGCCAGACCAG 13382 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACAA 25353 ||||| || || | | || ||||| |||||||||| | | | | ||| || ||||| Sbjct 13383 CAAAGGCTTATCTTTGCAGGAAAACAGCTCGAAGATGGGCGTACTCT-AGCAGACTACAA 13441 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| || ||||| || ||| ||||||| ||| | || ||||| || || Sbjct 13442 TATCCAGAAAGAGTCTACCCTTCATTTGGTGCTGAGGTTGAGGGGTGG 13489 >seq14670 Length=61898 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/145 (75%), Gaps = 1/145 (1%) Strand=Plus/Minus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 || |||||||| || ||||| ||||| |||||| | || | | || |||||| | ||| Sbjct 32033 GACAAAGAGGGAATTCCGCCTGATCAACAAAGATTGATATTTGCTGGGAAACAATTAGAA 31974 Query 25328 GATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 |||| |||| | ||||||||||| ||||| ||||| || ||||| | || || Sbjct 31973 GATGGAAGAACACTTGCTGATTACAATATCCAAAAGGAATCGACGCTTCATCTCGTTTTG 31914 Query 25388 AGATTGAGAGGAGGAA-AATGATCA 25411 ||||||||||| |||| ||||||| Sbjct 31913 AGATTGAGAGGTGGAACCATGATCA 31889 >seq6802 Length=18417 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/145 (75%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 || |||||||| || ||||| ||||| |||||| | || | | || |||||| | ||| Sbjct 11151 GACAAAGAGGGAATTCCGCCTGATCAACAAAGATTGATATTTGCTGGGAAACAATTAGAA 11210 Query 25328 GATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 |||| |||| | ||||||||||| ||||| ||||| || ||||| | || || Sbjct 11211 GATGGAAGAACACTTGCTGATTACAATATCCAAAAGGAATCGACGCTTCATCTCGTTTTG 11270 Query 25388 AGATTGAGAGGAGGAA-AATGATCA 25411 ||||||||||| |||| ||||||| Sbjct 11271 AGATTGAGAGGTGGAACCATGATCA 11295 >seq6637 Length=15695 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/145 (75%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 || |||||||| || ||||| ||||| |||||| | || | | || |||||| | ||| Sbjct 3863 GACAAAGAGGGAATTCCGCCTGATCAACAAAGATTGATATTTGCTGGGAAACAATTAGAA 3922 Query 25328 GATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 |||| |||| | ||||||||||| ||||| ||||| || ||||| | || || Sbjct 3923 GATGGAAGAACACTTGCTGATTACAATATCCAAAAGGAATCGACGCTTCATCTCGTTTTG 3982 Query 25388 AGATTGAGAGGAGGAA-AATGATCA 25411 ||||||||||| |||| ||||||| Sbjct 3983 AGATTGAGAGGTGGAACCATGATCA 4007 >seq16550 Length=20979 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/232 (70%), Gaps = 5/232 (2%) Strand=Plus/Minus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || ||||| | ||||| || || | || || || | ||||| |||||||||| | Sbjct 18588 AATATGCAGATCTTTGTTAAGACTCTCACGGGTAAGACCATCACTCTCGAAGTCGAGAGC 18529 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 || |||||||| | |||| | |||| | || ||||| ||||| || || ||| Sbjct 18528 TCTGACACTATCGATAATGTAAGGCCAAAATCCAA-GACAAAGAAGGTATCCCCCCAGAT 18470 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATT 25349 |||||||| | || | | || || || ||||| |||| || | || ||| | | Sbjct 18469 CAGCAAAGGTTGATCTTTGCTGGAAAGCAGCTCGAGGATGGCAGGACCCTGGCAG--ACT 18412 Query 25350 ACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||||||||| ||||| ||| | ||| | ||||| || ||||| ||||| Sbjct 18411 ACAATATTCAAAAGGAATCAACCCTCCATCTTGTGTTGAGGTTGAGGGGAGG 18360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444982709124000