Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq13411 91.5 1e-13 seq5340 91.5 1e-13 seq14670 82.4 6e-11 seq10926 82.4 6e-11 seq6802 82.4 6e-11 seq6637 82.4 6e-11 >seq13411 Length=19963 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 106257 AAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCC 106316 |||||||| || || || ||||| || || ||||| || || ||| | ||| ||| || Sbjct 11259 AAAATGCAGATCTTCGTAAAAACCTTAACCGGCAAAACAATAACCTTAGAAGTCGAATCC 11318 Query 106317 GGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGAT 106376 ||| | | | | | |||||| || ||| |||||||||||| | || || Sbjct 11319 TCCGACACAATCGACAATGTGAAAGCCAAGATTCAAGACAAAGAAGGCATCCCACCAGAC 11378 Query 106377 CAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTAC 106436 |||||| | | || | ||| ||||||||| | ||||| | || | | ||| ||| Sbjct 11379 CAACAACGTTTAATCTTTGCAGGCAAACAACTTGAAGACGGCAGGACATTAGCCGACTAC 11438 Query 106437 AACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || || ||||||||||| || || ||||| || || | ||||| || || Sbjct 11439 AATATCCAAAAAGAATCCACTCTTCATTTGGTCTTACGTTTACGTGGCGG 11488 >seq5340 Length=22833 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 106257 AAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCC 106316 |||||||| || || || ||||| || || ||||| || || ||| | ||| ||| || Sbjct 14492 AAAATGCAGATCTTCGTAAAAACCTTAACCGGCAAAACAATAACCTTAGAAGTCGAATCC 14433 Query 106317 GGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGAT 106376 ||| | | | | | |||||| || ||| |||||||||||| | || || Sbjct 14432 TCCGACACAATCGACAATGTGAAAGCCAAGATTCAAGACAAAGAAGGCATCCCACCAGAC 14373 Query 106377 CAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTAC 106436 |||||| | | || | ||| ||||||||| | ||||| | || | | ||| ||| Sbjct 14372 CAACAACGTTTAATCTTTGCAGGCAAACAACTTGAAGACGGCAGGACATTAGCCGACTAC 14313 Query 106437 AACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || || ||||||||||| || || ||||| || || | ||||| || || Sbjct 14312 AATATCCAAAAAGAATCCACTCTTCATTTGGTCTTACGTTTACGTGGCGG 14263 >seq14670 Length=61898 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 106353 GACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAA 106412 |||||||| || | || |||||||||||| | || | ||| || |||||||||||| Sbjct 32033 GACAAAGAGGGAATTCCGCCTGATCAACAAAGATTGATATTTGCTGGGAAACAATTAGAA 31974 Query 106413 GATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||| | ||| | | |||||||| || ||||| ||||| || || ||| | || ||| Sbjct 31973 GATGGAAGAACACTTGCTGATTACAATATCCAAAAGGAATCGACGCTTCATCTCGTTTTG 31914 Query 106473 AGGTTACGAGGAGGA 106487 || || |||| ||| Sbjct 31913 AGATTGAGAGGTGGA 31899 >seq10926 Length=11099 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| |||||||| ||||| ||||| || || |||||||| |||| ||| | Sbjct 8482 ATGCAGATTTTTGTGAAAACTTTGACAGGGAAAACCATTACTTTGGAGGTTGAAAGCTCG 8423 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | | || || || || || |||||||| | || || || Sbjct 8422 GATACCATTGACAACGTCAAGGCTAAGATCCAAGATAAAGAAGGAATCCCACCGGACCAG 8363 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || |||||||| | ||| || ||||| | |||||| | ||| | | ||||||||| Sbjct 8362 CAGAGGCTTATCTTTGCAGGAAAACAGCTTGAAGATGGTCGTACTCTAGCTGATTACAAC 8303 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTT 106477 || || ||||| ||||| || || || || ||||||| Sbjct 8302 ATCCAGAAAGAGTCTACCCTTCACTTGGTGCTGAGGTT 8265 >seq6802 Length=18417 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 106353 GACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAA 106412 |||||||| || | || |||||||||||| | || | ||| || |||||||||||| Sbjct 11151 GACAAAGAGGGAATTCCGCCTGATCAACAAAGATTGATATTTGCTGGGAAACAATTAGAA 11210 Query 106413 GATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||| | ||| | | |||||||| || ||||| ||||| || || ||| | || ||| Sbjct 11211 GATGGAAGAACACTTGCTGATTACAATATCCAAAAGGAATCGACGCTTCATCTCGTTTTG 11270 Query 106473 AGGTTACGAGGAGGA 106487 || || |||| ||| Sbjct 11271 AGATTGAGAGGTGGA 11285 >seq6637 Length=15695 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 106353 GACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAA 106412 |||||||| || | || |||||||||||| | || | ||| || |||||||||||| Sbjct 3863 GACAAAGAGGGAATTCCGCCTGATCAACAAAGATTGATATTTGCTGGGAAACAATTAGAA 3922 Query 106413 GATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||| | ||| | | |||||||| || ||||| ||||| || || ||| | || ||| Sbjct 3923 GATGGAAGAACACTTGCTGATTACAATATCCAAAAGGAATCGACGCTTCATCTCGTTTTG 3982 Query 106473 AGGTTACGAGGAGGA 106487 || || |||| ||| Sbjct 3983 AGATTGAGAGGTGGA 3997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402231164405600