Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq945 217 2e-50 seq3314 118 2e-20 seq13482 109 8e-18 seq2572 104 3e-16 seq9138 95.1 2e-13 seq14411 93.3 6e-13 >seq945 Length=6199 Score = 217 bits (240), Expect = 2e-50 Identities = 367/524 (70%), Gaps = 12/524 (2%) Strand=Plus/Plus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| || | |||| | || ||||||||||| |||||| |||| ||||| ||| Sbjct 1644 TGTTCCCAATTCAATACCCACAAATCTGGGAAATGTATAAAAAAG-CCGAAGCCTCATTT 1702 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGA-CACGGTCCACTGGGTGTCGCTGAGCGA 1455871 ||||||||||| || ||||| | || || || ||| |||||| | | | ||| Sbjct 1703 TGGACCGCCGAAGAAGTCGATTTATCCGAAGATCAACGTC-ACTGGGACGCCTTAACCGA 1761 Query 1455872 CGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCG 1455931 || ||| ||||| ||||| | ||||||||||| |||||||||||| || ||||||| Sbjct 1762 CGGCGAACGCCACTTCATTACTCACGTCCTCGC-TTTTTTCGCCGCGTCAGACGGCATCG 1820 Query 1455932 TGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGT 1455991 | ||| ||||| || || || ||||||||||| |||||| | | ||||| ||| || Sbjct 1821 TTCTCGAAAACCTCGCTGGTCGGTTTATGAAAGAAGTCCAAGTCGCCGAGGCGCGTGCGT 1880 Query 1455992 TTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCG 1456051 ||||||| ||||| ||||| || || || || || ||||||| || | || | | Sbjct 1881 TTTACGGATTCCAAATCGCGATTGAGAATATTCATTCTGAAATGTATAGTTTGTTGTTGG 1940 Query 1456052 ACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGC 1456111 | | || | || || | || || ||| | ||||| || || || ||| | | Sbjct 1941 AATCTTATATTAAAGATTCTAATGAAAAAAACCGGTTATTTCGGGCTATTGAAACGATTC 2000 Query 1456112 CGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACA 1456171 | | || |||||| ||| ||||||| |||| ||||| || || ||| | Sbjct 2001 CTTGTGTTGAGAAAAAAGCCAACTGGGCTTTGAAATGGAT------TGATGGATCCGAAA 2054 Query 1456172 CTTT-GCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTT 1456229 |||| || || ||| | ||| ||||| ||||||| || || ||||| ||||| |||| Sbjct 2055 CTTTCGCAGAACGGATTATCGCGTTTGCTTGCGTCGAAGGGATATTTTTTTCGGGGAGTT 2114 Query 1456230 TCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGT 1456273 | ||||| || |||||| | || || || || | ||||| ||| Sbjct 2115 TTTGCGCGATTTTTTGGTTGAAAAAACGTGGGTTAATGCCGGGT 2158 >seq3314 Length=31422 Score = 118 bits (130), Expect = 2e-20 Identities = 203/284 (71%), Gaps = 8/284 (3%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 |||| || |||| |||| | || |||||||||||| |||||| |||| ||||| ||| Sbjct 23272 TGTTTCCAATCCAATACCCACAAATTTGGGAAATGTACAAAAAAG-CCGAAGCCTCATTT 23214 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCC-GAC-ACGGTCCACTGGGTGTCGCTGAGCG 1455870 ||||| || || || ||||| | ||| ||| | ||| | | | |||| | | | Sbjct 23213 TGGACAGCAGAAGAAGTCGATTTAT-CGCAAGACCAACGTC-ATTACGAGTCGTTAACAG 23156 Query 1455871 ACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATC 1455930 ||| ||| || || ||| | | ||||| ||||| ||||| |||||| ||||| || Sbjct 23155 ACGGCGAACGTCACTTCGTGACTCACGTTCTCGCATTTTT-CGCCGCATCAGATGGAATT 23097 Query 1455931 GTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCA-ATTGCCAGAGGCACGTTT 1455989 || || || |||| | |||||||||||| | || || ||| ||||||||| Sbjct 23096 GTTTTGGAAAATTTGGCTTCAAGGTTTATGAAAGAGATACAGATCGCC-GAGGCACGTGC 23038 Query 1455990 GTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAA 1456033 ||||||||||| ||||| ||||| || || ||||| || |||| Sbjct 23037 TTTTTACGGGTTTCAGATTGCCATTGAGAATATCCATTCGGAAA 22994 >seq13482 Length=36463 Score = 109 bits (120), Expect = 8e-18 Identities = 166/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| |||||| ||||| ||||| || ||| | || || ||| |||| |||| || Sbjct 27174 ATCTTCAAGGTCCTCAAACAGGTCCATCCCGATATCG---GG--ATC-TCCAGCAAGGCC 27121 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCG-GCACCGAGGCCGG 725029 ||| |||||||||||||| |||||||||| |||| ||| ||| ||||||| Sbjct 27120 ATGGGAATCATGAACTCGTTCATCAACGACATCTTCGAGAAGCTCGCGCAG-GAGGCCGC 27062 Query 725030 TCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 ||||| | | ||||||| ||||| | | | || ||||||||||||||||| Sbjct 27061 CAAGCTGGCCAGGTACAACAAGAAGAACACCCTTTCCTCCCGTGAGATCCAGACCGCCGT 27002 Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | || | | | |||||| |||||| |||||||||||||||||||| Sbjct 27001 CAGACTCGTTCTTCCCGGCGAGTTGGCCAAACACGCCGTCTCCGAGGGCAC 26951 >seq2572 Length=8519 Score = 104 bits (114), Expect = 3e-16 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| |||||| ||||| ||||| || ||| | || || ||| |||| |||| || Sbjct 3887 ATCTTCAAGGTCCTCAAACAGGTCCATCCCGATATCG---GG--ATC-TCCAGCAAGGCC 3940 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCG-GCACCGAGGCCGG 725029 ||| |||||||||||||| |||||||||| |||| ||| ||| ||||||| Sbjct 3941 ATGGGAATCATGAACTCGTTCATCAACGACATCTTCGAGAAGCTCGCGCAG-GAGGCCGC 3999 Query 725030 TCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 || || | | ||||||| ||||| | | | || ||||||||||||||||| Sbjct 4000 CAAGCTCGCCAGGTACAACAAGAAGAACACCCTTTCCTCCCGTGAGATCCAGACCGCCGT 4059 Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | || | | | |||||| |||||| |||||||||||||||||||| Sbjct 4060 CAGACTCGTTCTTCCCGGCGAGTTGGCCAAACACGCCGTCTCCGAGGGCAC 4110 >seq9138 Length=9078 Score = 95.1 bits (104), Expect = 2e-13 Identities = 164/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| |||||| ||||| ||||| || ||| | || || ||| |||| |||| || Sbjct 7141 ATCTTCAAGGTCCTCAAACAGGTCCATCCCGATATCG---GG--ATC-TCCAGCAAGGCC 7194 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCG-GCACCGAGGCCGG 725029 ||| |||||||||||||| |||||||||| |||| ||| ||| ||||||| Sbjct 7195 ATGGGAATCATGAACTCGTTCATCAACGACATCTTCGAGAAGCTCGCGCAG-GAGGCCGC 7253 Query 725030 TCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 ||||| | | ||||||| ||||| | | || ||||||||||||||||| Sbjct 7254 CAAGCTGGCCAGGTACAACAAGAAGAACACCCTTTCTTCCCGTGAGATCCAGACCGCCGT 7313 Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || | | | |||||| |||| | ||||||||||| || ||||||| Sbjct 7314 CAGACTCGTTCTTCCCGGCGAGTTGGCGAAACACGCCGTCTCTGAAGGCACCA 7366 >seq14411 Length=27087 Score = 93.3 bits (102), Expect = 6e-13 Identities = 133/185 (72%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCG-G 725017 |||| |||| ||||| ||||||||||| ||| |||||||||| |||| ||| | Sbjct 1106 TCCAGCAAGGCCATGGGAATCATGAACTCATTTATCAACGACATCTTCGAGAAGCTCGCG 1165 Query 725018 CACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGAT 725077 || || |||| | ||||| | | ||||||| ||||| | | || ||||| Sbjct 1166 CAG-GAAGCCGCTAAGCTGGCCAGGTACAACAAGAAGAACACCCTTTCTTCCCGTGAGAT 1224 Query 725078 CCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGG 725137 |||||||||||| | || | | | ||| ||| |||| | ||||||||||||||||| Sbjct 1225 CCAGACCGCCGTCAGACTCGTTCTCCCCGGTGAATTGGCGAAACACGCCGTCTCCGAGGG 1284 Query 725138 CACCA 725142 ||||| Sbjct 1285 CACCA 1289 Score = 86.0 bits (94), Expect = 9e-11 Identities = 158/226 (70%), Gaps = 8/226 (4%) Strand=Plus/Plus Query 724918 AGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGA 724977 |||| ||||| ||||| || ||| | || || ||| |||| |||| ||||| | Sbjct 9018 AGGTCCTCAAACAGGTCCATCCCGATATCG---GG--ATC-TCCAGCAAGGCCATGGGAA 9071 Query 724978 TCATGAACTCGTTTGTCAACGACATGATCGACCGCATCG-GCACCGAGGCCGGTCGCCTG 725036 |||||||||| || |||||||||| |||| ||| ||| ||||||| ||| Sbjct 9072 TCATGAACTCTTTCATCAACGACATCTTCGAGAAGCTCGCGCAG-GAGGCCGCCAAGCTG 9130 Query 725037 GCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTG 725096 || | | ||||||| ||||| | | | || ||||||||||||||||| | || Sbjct 9131 GCCAGGTACAACAAGAAGAACACCCTTTCCTCCCGTGAGATCCAGACCGCCGTCAGACTC 9190 Query 725097 ATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | | | ||| || |||||| |||| |||||| |||||||||| Sbjct 9191 GTTCTTCCCGGTGAGTTGGCCAAACACGTCGTCTCTGAGGGCACCA 9236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175874929352150