Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq945 228 1e-54 seq3314 159 5e-34 seq14165 134 2e-26 seq4091 134 2e-26 >seq945 Length=6199 Score = 228 bits (252), Expect = 1e-54 Identities = 594/895 (66%), Gaps = 18/895 (2%) Strand=Plus/Minus Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384 ||| || || || ||||| | |||||| ||||||||||| || || | ||| || || Sbjct 2509 TTTCTGATACTCCCCAACCCTTTTCTCAAAAAAATTAGTCTTCCCCTGCAACGAGATCAA 2450 Query 39385 TTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAAT 39444 ||||| ||||||||||||| ||||||| ||||| | | || || | | Sbjct 2449 CTCCATCCAATCAAACGGATTCTGCACATTATACATTTTTGAATAACCCAACGCCCCCAA 2390 Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 ||| ||||| || ||| | || || || |||||| || | |||||| || | | Sbjct 2389 CAACCTATCCGCGACATACTCAATATAAACACTCATCAAATCCCCATTCATCCCAACCAA 2330 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564 | || | ||||| | ||||| ||||||||| ||| || |||| || || Sbjct 2329 AGCACACGGCAACGCCTCGCAAACGAACTCCCTTTCGATGTTTACAGCGTCTGCGATAAT 2270 Query 39565 CGATGTTACTACCTCATCACTCGG-TGGATG--CAATAAA-TGTTTAAACATTAAGCAGG 39620 | | |||| || |||||| | || ||| ||| ||| ||| || || | Sbjct 2269 CCCTTTTACGCGTTCCTCACTCAACTTCATTTTCAACAAACTGTATAAC----AAACACG 2214 Query 39621 CGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAG 39680 |||| || ||||| | ||||| ||||| || || ||||| ||||| || | || | Sbjct 2213 CGAAATCGCAATGCAAACCCTCGTCTCTCGATATCAACTCGTTTGAAAACGTTAAACCCG 2154 Query 39681 GCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCA-GAAAAGAAGATG 39739 |||||| ||||| ||||| | |||||| || || |||||| ||| ||||| || || Sbjct 2153 GCATTAACCCACGTTTTTTCAACCAAAAAATCGC-GCAAAAACTCCCCGAAAAAAATATC 2095 Query 39740 CCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTT--GTATCATTATGTATCC 39797 ||||| || ||||| || | || | ||| || || || | ||| || |||| Sbjct 2094 CCTTCGACGCAAGCAAACGCGATAATCCGTTCTGCGAAAGTTTCGGATCC--ATCAATCC 2037 Query 39798 ACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 39857 | ||| ||||| | ||||| |||| |||||||| || ||||| ||||| ||| | Sbjct 2036 ATTTCAAAGCCCAGTTGGCTTTTTTCTCAACACAAGGAATCGTTTCAATAGCCCGAAATA 1977 Query 39858 GATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTG 39917 | |||||||| | |||||||| ||| | || | |||| |||||||||||| | Sbjct 1976 ACCGGTTTTTTTCATTAGAATCTTTAATATAAGATTCCAACAACAAACTATACATTTCAG 1917 Query 39918 AATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTA 39977 |||| || || |||||||| || || ||||||||||| | || || | | ||| | Sbjct 1916 AATGAATATTCTCAATCGCGATTTGGAATCCGTAAAACGCACGCGCCTCGGCGACTTGGA 1857 Query 39978 CCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAA 40037 | ||| ||| | | || | ||||| || || || || ||||| |||| Sbjct 1856 CTTCTTTCATAAACCGACCAGCGAGGTTTTCGAGAACGATGCCGTCTGACGCGGCGAAAA 1797 Query 40038 ATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGT--CATT 40095 | || | || || |||| || | ||| || || || | ||||| | || Sbjct 1796 AAGCGAGGACGTGAGTAATGAAGTGGCGTTCGCCGTCGGTTAAGGCGTCCCAGTGACGTT 1737 Query 40096 GATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTA 40155 | ||||| |||| ||| |||||||| || |||||||| || || || || ||||| || Sbjct 1736 G--ATCTTCGGATAAATCGACTTCTTCGGCGGTCCAAAATGAGGCTTCGGCTTTTTTATA 1679 Query 40156 CATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTT 40210 ||| | ||| || | | ||||| ||||| || ||| |||| || ||| ||| Sbjct 1678 CATTTCCCAGATTTGTGGGTATTGAATTGGGAACATACAGAATCGATCTGGGTTT 1624 >seq3314 Length=31422 Score = 159 bits (176), Expect = 5e-34 Identities = 288/419 (69%), Gaps = 4/419 (1%) Strand=Plus/Plus Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853 |||||||| | ||||||| || ||||| | ||||| || || ||||| |||||| | Sbjct 22876 ATCCACTTAAGCGCCCAATTGGCCTTCTTTTGAACACACGGAATAGTTTCAATAGCACGA 22935 Query 39854 AAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATT 39913 || || |||||| | ||| |||| ||| | || | | || |||||||||| Sbjct 22936 AACAGCCTGCTCTTTTCACTAGAATCCTTAATATAAGATTCCAAAAGCAAACTATACATT 22995 Query 39914 TCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATT 39973 || |||||||| || ||||| || |||||||| ||||||||| | ||| || | || Sbjct 22996 TCCGAATGGATATTCTCAATGGCAATCTGAAACCCGTAAAAAGCACGTGCCTCGGCGATC 23055 Query 39974 TGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCA 40033 |||| |||| ||| ||| ||||||||||| || |||||||| ||||| Sbjct 23056 TGTATCTCTTTCATAAACCTTGAAGCCAAATTTTCCAAAACAATTCCATCTGATGCGGCG 23115 Query 40034 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAA--TTTATTCCAGT 40091 |||||||| | || || | | || | ||| || ||| || | | | Sbjct 23116 AAAAATGCGAGAACGTGAGTCACGAAGTGACGTTCGCCGTCTGTTAACGACTCGTAATGA 23175 Query 40092 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTT 40151 | ||| |||| |||| ||| |||||||| ||||||||||| || || || || |||| Sbjct 23176 CGTTG--GTCTTGCGATAAATCGACTTCTTCTGCTGTCCAAAATGAGGCTTCGGCTTTTT 23233 Query 40152 TGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTT 40210 ||||||| | ||| || | | ||||| |||||||| || ||||| | ||||||| Sbjct 23234 TGTACATTTCCCAAATTTGTGGGTATTGGATTGGAAACATGCAGAATCTGTCTGGATTT 23292 >seq14165 Length=56756 Score = 134 bits (148), Expect = 2e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| ||||| | |||| |||||| | |||| | || | |||||| || | ||| ||| Sbjct 34421 CCTCCTTGATCAACATATCGGGCAGTATCATTAAACACACGCAGCATTGGCACAATGCCA 34480 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | ||||| |||||| || || ||||| |||| || |||||| |||||| Sbjct 34481 TTGGATGTTCCATTCGTTCCACGTATGTAGCTTCCAGTTGCACGGATATTATGAATAGAA 34540 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| ||||||||||| ||| || | |||||| || || ||||||||||| Sbjct 34541 ACACCAATTCCTCCTGCTGATTTGCTAATAACAGCACATTCCTTTAACGTGTCATATATG 34600 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || || |||||||| ||| ||||| | || ||||||||| Sbjct 34601 CCTTCAATGCTATCTTCTTTCATGCATATCAGGAAACAGCTA 34642 >seq4091 Length=20028 Score = 134 bits (148), Expect = 2e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| ||||| | |||| |||||| | |||| | || | |||||| || | ||| ||| Sbjct 16137 CCTCCTTGATCAACATATCGGGCAGTATCATTAAACACACGCAGCATTGGCACAATGCCA 16196 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | ||||| |||||| || || ||||| |||| || |||||| |||||| Sbjct 16197 TTGGATGTTCCATTCGTTCCACGTATGTAGCTTCCAGTTGCACGGATATTATGAATAGAA 16256 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| ||||||||||| ||| || | |||||| || || ||||||||||| Sbjct 16257 ACACCAATTCCTCCTGCTGATTTGCTAATAACAGCACATTCCTTTAACGTGTCATATATG 16316 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || || |||||||| ||| ||||| | || ||||||||| Sbjct 16317 CCTTCAATGCTATCTTCTTTCATGCATATCAGGAAACAGCTA 16358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686736428823000