Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq945 208 6e-49 seq3314 127 2e-24 >seq945 Length=6199 Score = 208 bits (230), Expect = 6e-49 Identities = 399/583 (68%), Gaps = 4/583 (1%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| ||||||||||| | | || ||| ||||||| |||||||| | || ||||||| Sbjct 1644 TGTTCCCAATTCAATACCCACAAATCTGGGAAATGTATAAAAAAGCCGAAGCCTCATTTT 1703 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAACCAC 43826 |||| || |||||||| ||||| | |||| | || ||| || |||| | || Sbjct 1704 GGACCGCCGAAGAAGTCGATTTATCCGAAGATCAACGTCACTGGGACGCCTTAAC-CGAC 1762 Query 43827 AA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTC 43885 ||| || || || || || | || ||||| || ||| ||||| || || Sbjct 1763 GGCGAACGCCACTTCATTACTCACGTCCTCGCTTTTTTCGCCGCGTCAGACGGCATCGTT 1822 Query 43886 AATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTT 43945 ||||| | | | |||||||| | ||||||| ||| | | || || || ||| Sbjct 1823 CTCGAAAACCTCGCTGGTCGGTTTATGAAAGAAGTCCAAGTCGCCGAGGCGCGTGCGTTT 1882 Query 43946 TATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGAT 44005 || || || ||||| || || || ||||||||||| |||||||| ||| | || | || Sbjct 1883 TACGGATTCCAAATCGCGATTGAGAATATTCATTCTGAAATGTATAGTTTGTTGTTGGAA 1942 Query 44006 ACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCT 44065 | || || |||||| | || || | || || ||| || || ||||| | ||| Sbjct 1943 TCTTATATTAAAGATTCTAATGAAAAAAACCGGTTATTTCGGGCTATTGAAACGATTCCT 2002 Query 44066 GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGA 44125 || | | ||||| ||||||| | |||||||| || | || |||| | | Sbjct 2003 TGTGTTGAGAAAAAAGCCAACTGGGCTTTGAAATGGATTGATGGATCCGAAACTTTCGCA 2062 Query 44126 GAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTC-AGGATCGTTTGCGGC 44184 ||||| || |||||||||| || ||||| || || ||||| ||| ||||| || Sbjct 2063 GAACGGATTATCGCGTTTGCTTGCGTCGAAGGGATATTTTTTTCGGGGAGTTTTTGC-GC 2121 Query 44185 CATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAAT 44244 || |||||||| || ||||| || || ||||| || || ||||||||||| ||||| || Sbjct 2122 GATTTTTTGGTTGAAAAAACGTGGGTTAATGCCGGGTTTAACGTTTTCAAACGAGTTGAT 2181 Query 44245 AAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTA 44287 | | || || || || ||||||||||| || || |||||| Sbjct 2182 ATCGAGAGACGAGGGTTTGCATTGCGATTTCGCGTGTTTGTTA 2224 >seq3314 Length=31422 Score = 127 bits (140), Expect = 2e-24 Identities = 303/453 (67%), Gaps = 4/453 (1%) Strand=Plus/Minus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||||||||| ||||| | | || ||| |||||||||||||||| | || ||||||| Sbjct 23272 TGTTTCCAATCCAATACCCACAAATTTGGGAAATGTACAAAAAAGCCGAAGCCTCATTTT 23213 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATT-GGATTGCATTAAAACCA 43825 |||||||||||||||| ||||| | ||||| | |||| || | | |||| | Sbjct 23212 GGACAGCAGAAGAAGTCGATTTATCGCAAGACCAACGTCATTACGAGT-CGTTAACAGAC 23154 Query 43826 CAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTC 43885 ||| || || | || ||| | || ||||| || || || || || || Sbjct 23153 GGCGAACGTCACTTCGTGACTCACGTTCTCGCATTTTTCGCCGCATCAGATGGAATTGTT 23094 Query 43886 AATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTT 43945 |||||||||| | ||||| | |||| | || | | || ||||| |||| Sbjct 23093 TTGGAAAATTTGGCTTCAAGGTTTATGAAAGAGATACAGATCGCCGAGGCACGTGCTTTT 23034 Query 43946 TATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGAT 44005 || |||||||| |||||||| || ||||| |||||||||||||| ||| | || | || Sbjct 23033 TACGGGTTTCAGATTGCCATTGAGAATATCCATTCGGAAATGTATAGTTTGCTTTTGGAA 22974 Query 44006 ACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAAC-AGTACC 44064 | || || || ||| || ||| | ||||| ||| || ||||| | | | Sbjct 22973 TCTTATATTAAGGATTCTAGTGAAAAGAGCAGGCTGTTTCGTGCTATTGAAACTATTCCG 22914 Query 44065 TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGG 44124 || | || || | || || | ||||| ||||| ||||| || || || |||| Sbjct 22913 TGTG-TTCAAAAGAAGGCCAATTGGGCGCTTAAGTGGATCGATGGGTCCGAATCCTTTGC 22855 Query 44125 AGAACGACTTGTCGCGTTTGCAGTTGTGGAAGG 44157 |||||| | |||| ||||| ||| ||||| Sbjct 22854 AGAACGGATCATCGCTTTTGCCTGTGTTGAAGG 22822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397358756800375