Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq13411 116 3e-21 seq5340 116 3e-21 seq16006 104 2e-17 seq13106 104 2e-17 seq8473 104 2e-17 seq10926 89.7 4e-13 seq16550 87.8 2e-12 seq5280 82.4 6e-11 >seq13411 Length=19963 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 || || || || || || |||||||| | || || |||||||| ||||||||||| ||| Sbjct 11488 CCGCCACGTAAACGTAAGACCAAATGAAGAGTGGATTCTTTTTGGATATTGTAGTCGGCT 11429 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 |||| || ||||||| || ||||| || || | || | ||| ||||| || || || Sbjct 11428 AATGTCCTGC-CGTCTTCAAGTTGTTTGCCTGCAAAGATTAAACGTTGTTGGTCTGGTGG 11370 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || ||||| || |||||| ||||| | || | ||||| | || ||| || Sbjct 11369 GATGCCTTCTTTGTCTTGAATCTTGGCTTTCACATTGTCGATTGTGTCGGAGGATTCGAC 11310 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| ||||| | |||||| || | ||||| || ||||| ||||| Sbjct 11309 TTCTAAGGTTATTGTTTTGCCGGTTAAGGTTTTTACGAAGATCTGCAT 11262 >seq5340 Length=22833 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 || || || || || || |||||||| | || || |||||||| ||||||||||| ||| Sbjct 14263 CCGCCACGTAAACGTAAGACCAAATGAAGAGTGGATTCTTTTTGGATATTGTAGTCGGCT 14322 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 |||| || ||||||| || ||||| || || | || | ||| ||||| || || || Sbjct 14323 AATGTCCTGC-CGTCTTCAAGTTGTTTGCCTGCAAAGATTAAACGTTGTTGGTCTGGTGG 14381 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || ||||| || |||||| ||||| | || | ||||| | || ||| || Sbjct 14382 GATGCCTTCTTTGTCTTGAATCTTGGCTTTCACATTGTCGATTGTGTCGGAGGATTCGAC 14441 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| ||||| | |||||| || | ||||| || ||||| ||||| Sbjct 14442 TTCTAAGGTTATTGTTTTGCCGGTTAAGGTTTTTACGAAGATCTGCAT 14489 >seq16006 Length=16259 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 || || | ||||| || |||||||| | ||||| ||||| || ||||||||||| ||| Sbjct 13489 CCACCCCTCAACCTCAGCACCAAATGAAGGGTAGACTCTTTCTGGATATTGTAGTCTGCT 13430 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || ||| | |||||||||||||| || || | || || | || || || ||||| Sbjct 13429 AGAGTA-CGCCCATCTTCGAGCTGTTTTCCTGCAAAGATAAGCCTTTGCTGGTCTGGCGG 13371 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||||||||| ||||| || | | | || | || || | |||||| Sbjct 13370 GATCCCCTCTTTATCCTGAATCTTAGCCTTGACGTTGTCAATCGTATCAGAACTTTCAAC 13311 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 |||| ||| || | ||| || |||| ||||||||||| || |||||| Sbjct 13310 CTCTAAAGTGATGGTTTTTCCTGTCAAGGTTTTCACAAATATCTGCATA 13262 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||||||||| || || || |||||||| || ||||||||| || | | | | || || Sbjct 13244 TACCAAATGCAATGTGGACTCTTTTTGGATGTTGTAGTCGGCCAGGGTCCTGCCATCCTC 13185 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 ||| || || || || |||| | | || || || ||||| | || |||||||| Sbjct 13184 GAGTTGCTTGCCAGCAAAAATCAACCTTTGCTGGTCTGGCGGGATCCCTTCTTTATCTTG 13125 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| || | | | || | ||||| | | ||| || || | ||| || | || Sbjct 13124 GATCTTTGCCTTGACGTTGTCAATGGTGTCAGAGCTTTCGACCTCCAAAGTGATGGTCTT 13065 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 || |||| ||| || || |||||||||||| || Sbjct 13064 CCCTGTCAAAGTCTTGACGAAGATTTGCATACCT 13031 >seq13106 Length=76417 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | |||| ||||||||||||| || ||| Sbjct 56324 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCTTCGAGCTGCTTGCCG 56265 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | |||||||| || || || || || | || || || || ||||||| || Sbjct 56264 GCGAAGATGAGACGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTG 56205 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | ||||| ||||| ||||| | || ||||| || ||| Sbjct 56204 ACGTTATCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTT 56145 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 56144 TTCACGAAGATCTGCAT 56128 >seq8473 Length=8692 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | |||| ||||||||||||| || ||| Sbjct 5384 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCTTCGAGCTGCTTGCCG 5443 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | |||||||| || || || || || | || || || || ||||||| || Sbjct 5444 GCGAAGATGAGACGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTG 5503 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | ||||| ||||| ||||| | || ||||| || ||| Sbjct 5504 ACGTTATCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTT 5563 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 5564 TTCACGAAGATCTGCAT 5580 >seq10926 Length=11099 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 || || | ||||| || ||||| || | ||||| ||||| || || ||||| || ||| Sbjct 8256 CCACCCCTCAACCTCAGCACCAAGTGAAGGGTAGACTCTTTCTGGATGTTGTAATCAGCT 8315 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || || | ||||| |||||||| || || | || || | ||| || ||||| || Sbjct 8316 AGAGTA-CGACCATCTTCAAGCTGTTTTCCTGCAAAGATAAGCCTCTGCTGGTCCGGTGG 8374 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || |||||||| |||||| || | | | || | || || | | |||||| Sbjct 8375 GATTCCTTCTTTATCTTGGATCTTAGCCTTGACGTTGTCAATGGTATCCGAGCTTTCAAC 8434 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | ||| || | ||| || |||| |||||||||||| || ||||| Sbjct 8435 CTCCAAAGTAATGGTTTTCCCTGTCAAAGTTTTCACAAAAATCTGCAT 8482 >seq16550 Length=20979 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||||| ||| || | ||| | || || || ||||||||||||||||| | Sbjct 18360 CCTCCCCTCAACCTCAACACAAGATGGAGGGTTGATTCCTTTTGAATATTGTAGTCTGCC 18419 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | | || |||||||| || || || | || | | || ||||| || || Sbjct 18420 AGGGTCCTGCCATCCTCGAGCTGCTTTCCAGCAAAGATCAACCTTTGCTGATCTGGGGGG 18479 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| ||||| || ||| ||| || | | || | |||||| | | || ||| Sbjct 18480 ATACCTTCTTTGTCTTGGATTTTGGCCTT-ACATTATCGATAGTGTCAGAGCTCTCGACT 18538 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| || | || ||||| ||||| || |||||||| |||||| Sbjct 18539 TCGAGAGTGATGGTCTTACCCGTGAGAGTCTTAACAAAGATCTGCATA 18586 >seq5280 Length=29361 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 ||||| | ||||| || || | ||| | || || || ||||| ||||||||||| || Sbjct 6542 CCTCCCCTCAACCTCAGCACAAGATGGAGGGTCGATTCCTTTTGGATATTGTAGTCTGCC 6483 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 ||| |||| | || || ||||| || ||||| | ||||| | ||| || || || || Sbjct 6482 AATG-TGCGACCATCCTCAAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCTGGGGG 6424 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || || || || ||| || || | | || | || |||| | || || Sbjct 6423 GATCCCTTCCTTGTCTTGGATTTTCGCCTTAACATTATCGATGGTATCTGAGCTCTCGAC 6364 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| ||||| || | || || || |||||||| |||||||| |||||| Sbjct 6363 TTCAAGAGTGATGGTCTTACCAGTGAGAGTTTTAACAAAGATCTGCATA 6315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424830433823400