Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13]
20,075 sequences; 326,165,195 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq14165 107 2e-18
seq4091 107 2e-18
seq12084 100 4e-16
>seq14165
Length=56756
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000
|| || |||||||| || |||||||| ||||| || | ||| || ||||| | ||
Sbjct 34787 TGAGGCCTTGGTGTTCCGGCATTGAAAAGGGTGGGAGATGCATGGGTGAACCATCTCTGT 34846
Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060
|||||| || |||||||| | ||||||||||| || ||| || || || | ||
Sbjct 34847 GACATCAAGTGGTATGTCTTGAGAACAGAATCAATATCATCCTTATGAATCCCAACAGCA 34906
Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGAT-A 112119
|| | ||| ||||||| || || |||| | | | |||| || | ||||| |
Sbjct 34907 ACTCTCATTAACATGTGTTGAGGTCTTTCTACAACCTTCCCATTGATCTTCAAAAGATAA 34966
Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167
| || ||||||||||||||| ||||||| || || | ||| |||||||
Sbjct 34967 GATC-TCTCAAGGGTTTTGAAACCAAAGAAATCATAGTCAAAGTCCCG 35013
>seq4091
Length=20028
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000
|| || |||||||| || |||||||| ||||| || | ||| || ||||| | ||
Sbjct 16504 TGAGGCCTTGGTGTTCCGGCATTGAAAAGGGTGGGAGATGCATGGGTGAACCATCTCTGT 16563
Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060
|||||| || |||||||| | ||||||||||| || ||| || || || | ||
Sbjct 16564 GACATCAAGTGGTATGTCTTGAGAACAGAATCAATATCATCCTTATGAATCCCAACAGCA 16623
Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGAT-A 112119
|| | ||| ||||||| || || |||| | | | |||| || | ||||| |
Sbjct 16624 ACTCTCATTAACATGTGTTGAGGTCTTTCTACAACCTTCCCATTGATCTTCAAAAGATAA 16683
Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167
| || ||||||||||||||| ||||||| || || | ||| |||||||
Sbjct 16684 GATC-TCTCAAGGGTTTTGAAACCAAAGAAATCATAGTCAAAGTCCCG 16730
>seq12084
Length=12162
Score = 100 bits (110), Expect = 4e-16
Identities = 190/277 (69%), Gaps = 2/277 (1%)
Strand=Plus/Minus
Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598
||| |||||||| || || | || ||||| || ||||| || |||||||||||| |
Sbjct 7427 AAAACCATCCATTTCAGTCAACAACTGATTGATGGTTTGCTCCCTCTCATCATTTCCACC 7368
Query 11599 -CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657
| || ||| || | | ||| | ||||| || || |||||||||||||| |||||||
Sbjct 7367 TCCTAA-ACCCGCCCCTCTCTGCCTCCCCACTGCGTCTATCTCATCAATGAATACAATAC 7309
Query 11658 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717
| ||| ||| || ||||||| | ||| | |||||| ||||| ||||| |
Sbjct 7308 AAGGTGCTTTTGATTTCGCCTTTTCAAACAAATCCCTAACCCTAGATGCACCAACACCCA 7249
Query 11718 CAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCG 11777
|||||| ||| ||||| | | |||| ||| | ||||| ||| | || || |
Sbjct 7248 CAAACAACTCAACAAATTCAGAAGCAGCACACGAAAAAAATGGCACACCAGCCTCCCCTG 7189
Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814
| | |||| || | |||||||| || || || ||
Sbjct 7188 CAACCGCTCTAGCTAACAGGGTCTTACCGGTTCCAGG 7152
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627874403220000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |