Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq14165 107 2e-18 seq4091 107 2e-18 seq12084 100 4e-16 >seq14165 Length=56756 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || |||||||| || |||||||| ||||| || | ||| || ||||| | || Sbjct 34787 TGAGGCCTTGGTGTTCCGGCATTGAAAAGGGTGGGAGATGCATGGGTGAACCATCTCTGT 34846 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| || |||||||| | ||||||||||| || ||| || || || | || Sbjct 34847 GACATCAAGTGGTATGTCTTGAGAACAGAATCAATATCATCCTTATGAATCCCAACAGCA 34906 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGAT-A 112119 || | ||| ||||||| || || |||| | | | |||| || | ||||| | Sbjct 34907 ACTCTCATTAACATGTGTTGAGGTCTTTCTACAACCTTCCCATTGATCTTCAAAAGATAA 34966 Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 | || ||||||||||||||| ||||||| || || | ||| ||||||| Sbjct 34967 GATC-TCTCAAGGGTTTTGAAACCAAAGAAATCATAGTCAAAGTCCCG 35013 >seq4091 Length=20028 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || |||||||| || |||||||| ||||| || | ||| || ||||| | || Sbjct 16504 TGAGGCCTTGGTGTTCCGGCATTGAAAAGGGTGGGAGATGCATGGGTGAACCATCTCTGT 16563 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| || |||||||| | ||||||||||| || ||| || || || | || Sbjct 16564 GACATCAAGTGGTATGTCTTGAGAACAGAATCAATATCATCCTTATGAATCCCAACAGCA 16623 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGAT-A 112119 || | ||| ||||||| || || |||| | | | |||| || | ||||| | Sbjct 16624 ACTCTCATTAACATGTGTTGAGGTCTTTCTACAACCTTCCCATTGATCTTCAAAAGATAA 16683 Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 | || ||||||||||||||| ||||||| || || | ||| ||||||| Sbjct 16684 GATC-TCTCAAGGGTTTTGAAACCAAAGAAATCATAGTCAAAGTCCCG 16730 >seq12084 Length=12162 Score = 100 bits (110), Expect = 4e-16 Identities = 190/277 (69%), Gaps = 2/277 (1%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| |||||||| || || | || ||||| || ||||| || |||||||||||| | Sbjct 7427 AAAACCATCCATTTCAGTCAACAACTGATTGATGGTTTGCTCCCTCTCATCATTTCCACC 7368 Query 11599 -CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 | || ||| || | | ||| | ||||| || || |||||||||||||| ||||||| Sbjct 7367 TCCTAA-ACCCGCCCCTCTCTGCCTCCCCACTGCGTCTATCTCATCAATGAATACAATAC 7309 Query 11658 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717 | ||| ||| || ||||||| | ||| | |||||| ||||| ||||| | Sbjct 7308 AAGGTGCTTTTGATTTCGCCTTTTCAAACAAATCCCTAACCCTAGATGCACCAACACCCA 7249 Query 11718 CAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCG 11777 |||||| ||| ||||| | | |||| ||| | ||||| ||| | || || | Sbjct 7248 CAAACAACTCAACAAATTCAGAAGCAGCACACGAAAAAAATGGCACACCAGCCTCCCCTG 7189 Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 | | |||| || | |||||||| || || || || Sbjct 7188 CAACCGCTCTAGCTAACAGGGTCTTACCGGTTCCAGG 7152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627874403220000