Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq14165 104 3e-17 seq4091 104 3e-17 seq3314 82.4 9e-11 >seq14165 Length=56756 Score = 104 bits (114), Expect = 3e-17 Identities = 160/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 104141 GACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCT-ATCTTCAACGGCT 104199 |||| |||| || || |||||| ||||||||||||||| || || ||||| | | Sbjct 35010 GACTTTGACTATGATTTCTTTGGTTTCAAAACCCTTGAGA-GATCTTATCTTTTGAAGAT 34952 Query 104200 CGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCA 104259 | |||| | | |||| || || ||||||| ||| | || || | || ||||| Sbjct 34951 CAATGGGAAGGTTGTAGAAAGACCTCAACACATGTTAATGAGAGTTGCTGTTGGGATTCA 34892 Query 104260 TGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCAT 104319 | ||| || ||||||||||| | |||||||| || |||||| || | ||||| Sbjct 34891 TAAGGATGATATTGATTCTGTTCTCAAGACATACCACTTGATGTCACAGAGATGGTTCAC 34832 Query 104320 TCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 || ||| | || ||||| |||||||| || |||||||| || ||| Sbjct 34831 CCATGCATCTCCCACCCTTTTCAATGCCGGAACACCAAGGCCTCAA 34786 >seq4091 Length=20028 Score = 104 bits (114), Expect = 3e-17 Identities = 160/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 104141 GACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCT-ATCTTCAACGGCT 104199 |||| |||| || || |||||| ||||||||||||||| || || ||||| | | Sbjct 16727 GACTTTGACTATGATTTCTTTGGTTTCAAAACCCTTGAGA-GATCTTATCTTTTGAAGAT 16669 Query 104200 CGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCA 104259 | |||| | | |||| || || ||||||| ||| | || || | || ||||| Sbjct 16668 CAATGGGAAGGTTGTAGAAAGACCTCAACACATGTTAATGAGAGTTGCTGTTGGGATTCA 16609 Query 104260 TGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCAT 104319 | ||| || ||||||||||| | |||||||| || |||||| || | ||||| Sbjct 16608 TAAGGATGATATTGATTCTGTTCTCAAGACATACCACTTGATGTCACAGAGATGGTTCAC 16549 Query 104320 TCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 || ||| | || ||||| |||||||| || |||||||| || ||| Sbjct 16548 CCATGCATCTCCCACCCTTTTCAATGCCGGAACACCAAGGCCTCAA 16503 >seq3314 Length=31422 Score = 82.4 bits (90), Expect = 9e-11 Identities = 113/155 (73%), Gaps = 5/155 (3%) Strand=Plus/Minus Query 94684 TATATTAAGGATGGTGCTGAGAAGAAGCA-GCTCTTTGAAGCCATCCAAACAGTTCCGTG 94742 |||||||||||| | ||| ||| |||| ||| ||| || || |||| ||||||| Sbjct 22970 TATATTAAGGATTCTAGTGAAAAG-AGCAGGCTGTTTCGTGCTATTGAAACTATTCCGTG 22912 Query 94743 TATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGC 94802 | |||||||||| || ||||||| | |||||| | ||| ||| |||||||| Sbjct 22911 TGTTCAAAAGAAGGCCAATTGGGCGCTTAAGTGGATCGAT---GGGTCCGAATCCTTTGC 22855 Query 94803 TGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTA 94837 || || || |||| ||||| |||||||| |||| Sbjct 22854 AGAACGGATCATCGCTTTTGCCTGTGTTGAAGGTA 22820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583114437993000