Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq7510 93.3 2e-14 seq13990 87.8 8e-13 >seq7510 Length=8825 Score = 93.3 bits (102), Expect = 2e-14 Identities = 204/296 (69%), Gaps = 11/296 (4%) Strand=Plus/Plus Query 65087 CGTGTTCCAAACTGACCATTTGGCATTAATAAA-TTAATATTGTTTGAACCAATAAAATT 65145 || || |||||||| ||| |||| | || || ||||| || || || | ||| || Sbjct 2614 CGGGTACCAAACTGCCCACTTGGG-TAAAGAAGGTTAATGTTATTACTGCCCACAAAGTT 2672 Query 65146 CTGAGCCATTCCGATAATTGCTGCATTTAA-ACTCGCTTCACCGTGATGATATCCTGAAT 65204 || ||||| || || |||| ||| || |||| ||||| |||||||| | || | Sbjct 2673 TTGGGCCATGCCAATGATTG-TGCTGACAAGACTCTGCTCACCATGATGATAAGCAGAGT 2731 Query 65205 GTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCCGTTGTTAAAT--TCTTTTT 65262 | ||||| ||||| ||||| |||||||||||||| | |||| || |||| ||| || Sbjct 2732 GCTCAGACACATAGCCACTGAATTGAGCAACTTTAACTTCC--TGGAAAATGGGCTTCTT 2789 Query 65263 AAATGCAGAATACAATATTTTCCGTAAACTAATTTTCAATCCATCCA--TTAAATTAGGA 65320 ||| ||| | ||| || || | | || |||||||||||||| || ||| ||| Sbjct 2790 AAAAGCACAGAACAGAATCTTTCTTTGACCCGGTTTCAATCCATCCACCATAGATTGGGA 2849 Query 65321 ATGCTTCTGTCACAATCATATTTTGAGAAATGTATGAATTCTTTGTTAATAAATTC 65376 || ||| | | |||| |||| || | || | ||||||||| || || || Sbjct 2850 TTG-ATCTTTGAAGATCAGCCATTGAAAACAGAATAAGTTCTTTGTTGATGAAGTC 2904 >seq13990 Length=27156 Score = 87.8 bits (96), Expect = 8e-13 Identities = 160/227 (70%), Gaps = 8/227 (4%) Strand=Plus/Plus Query 65087 CGTGTTCCAAACTGACCATTTGGCATTAATAAA-TTAATATTGTTTGAACCAATAAAATT 65145 || || |||||||| ||| |||| | || || ||||| || || || | ||| || Sbjct 16846 CGGGTACCAAACTGCCCACTTGGG-TAAAGAAGGTTAATGTTATTACTGCCCACAAAGTT 16904 Query 65146 CTGAGCCATTCCGATAATTGCTGCATTTAA-ACTCGCTTCACCGTGATGATATCCTGAAT 65204 || ||||| || || |||| ||| || |||| ||||| |||||||| | || | Sbjct 16905 TTGGGCCATGCCAATGATTG-TGCTGACAAGACTCTGCTCACCATGATGATAAGCAGAGT 16963 Query 65205 GTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCCGTTGTTAAAT--TCTTTTT 65262 | ||||| ||||| ||||| |||||||||||||| | |||| || |||| ||| || Sbjct 16964 GCTCAGACACATAGCCACTGAATTGAGCAACTTTAACTTCC--TGGAAAATGGGCTTCTT 17021 Query 65263 AAATGCAGAATACAATATTTTCCGTAAACTAATTTTCAATCCATCCA 65309 ||| ||| | ||| || || | | || |||||||||||||| Sbjct 17022 AAAAGCACAGAACAGAATCTTTCTTTGACCCGGTTTCAATCCATCCA 17068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235622337573750