Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq20014 563 1e-155 seq2978 489 2e-133 seq2990 376 3e-99 seq7305 156 5e-33 seq18988 107 2e-18 seq147 82.4 9e-11 >seq20014 Length=5322 Score = 563 bits (624), Expect = 1e-155 Identities = 699/954 (73%), Gaps = 2/954 (0%) Strand=Plus/Minus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 ||||| |||| |||||||| || | ||||| || | | || || | | ||| Sbjct 1886 TTTACATTGGATGGTTTGGCGTTTTGATGATCCCTACCTTATTGACCGCAACTTC-TGTA 1828 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || ||||| || || || || ||||| || |||||||| ||||| || Sbjct 1827 TTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTT 1768 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | ||||||||||| ||||||||||| || || || || || | | || | || Sbjct 1767 TCTGGATCTCTACTTTATGGAAACAATATTATTTCGGGTGCCATTATTCCTACTTCTGCA 1708 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || || || | || || |||||||| |||||||||||| | ||||| |||||| | ||| Sbjct 1707 GCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCTGTTGATGAATGGTTATAC 1648 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 ||||| || || || |||| |||| | |||||| | | ||| | | ||||||| Sbjct 1647 AATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 1588 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || | ||||||||||||| | | || || ||||| |||||||| ||||||||| Sbjct 1587 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATAT 1528 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565 || || || || | || |||| || |||||| | |||| ||| | ||||||||| Sbjct 1527 TCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGC 1468 Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625 || ||||||||||||||||| || ||||| ||||| |||||||| ||| |||||||||| Sbjct 1467 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 1408 Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685 || ||||||||||| || ||||||||||| || ||||| || ||||| ||||| || || Sbjct 1407 GCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGC 1348 Query 176686 GGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACA 176745 || || || || || ||||| || | | || || ||| | | || || || Sbjct 1347 GGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACC 1288 Query 176746 ACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAAC 176805 || ||||| ||||| ||| | ||||||| |||||| ||||||||||| || || || Sbjct 1287 ACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAAGAAGAAACTTATAAT 1228 Query 176806 ATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAAC 176865 || ||||| || |||||||| ||||| || | |||||||| |||||| |||||| ||| Sbjct 1227 ATCGTAGCCGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAAC 1168 Query 176866 TCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCA 176925 || | | | || |||||||| || || | || || || | |||||||| ||||| Sbjct 1167 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCT 1108 Query 176926 ATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTA 176985 | ||| | |||| ||||| |||||||| || |||||||| |||||||| || || | Sbjct 1107 TTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTT 1048 Query 176986 GACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGT 177045 || | || || ||| || |||| |||||| |||||||||| ||||||||| Sbjct 1047 GATAGTCAAGGCCGTGTAATTAACACTTGGGCTGATATCATTAACCGTGCTAACCTTGGT 988 Query 177046 ATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 177099 |||||||||||||| || |||||||||||||| ||||| || ||| | |||||| Sbjct 987 ATGGAAGTTATGCATGAACGTAATGCTCACAATTTCCCTCTAGACTTAGCTGCT 934 >seq2978 Length=1535 Score = 489 bits (542), Expect = 2e-133 Identities = 662/907 (73%), Gaps = 13/907 (1%) Strand=Plus/Plus Query 176205 TTTTATCGTTGCATTTATTGCAG-CACCACCTGTCGATATCGAC-GGTATT-CGCGAACC 176261 |||||| | || || ||||| | | || || || ||||| || |||||| || ||||| Sbjct 10 TTTTATTATCGCCTTCATTGCTGACTCCTCCAGTAGATATTGATAGGTATTACGTGAACC 69 Query 176262 -AGTAGCA--GGATCTCT-ACTCT-ATGGAAACAACATCATCTCAGGAGCAGTCGTCCCA 176316 ||| | |||||||| ||| | |||||| ||| || || || || || | | || Sbjct 70 TAGTTTTACTGGATCTCTTACTTTTATGGAA-CAATATTATTTCGGGTGCCATTATTCCT 128 Query 176317 AGCTCAAACGCAATCGGACTACACTTCTACCCAATCTGGGAAG-CAGCAACAGTTGAC-G 176374 | || || || || | || || |||||||| ||||||| ||||| | ||||| | Sbjct 129 ACTTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGGCAGCATCTGTTGAATG 188 Query 176375 AATGGCTCTACAAT-GGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATC 176433 ||||| | |||||| || || || || |||| |||| | |||||| | | ||| | Sbjct 189 AATGGTTATACAATAGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTA 248 Query 176434 TCAGCTTACATGGGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATC 176493 | ||||||||| || | ||||||||||||| | | || || ||||| |||||||| Sbjct 249 GCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATT 308 Query 176494 TGTGTTGCATACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTC 176553 ||||||||| || || || || | || |||| || |||||| | |||| ||| | Sbjct 309 GCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTACCCAATT 368 Query 176554 GGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATG 176613 ||||||||| || ||||||||||||||||| || ||||| ||||| |||||||| ||| Sbjct 369 GGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATG 428 Query 176614 TTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCA 176673 |||||||||| || ||||||||||| || ||||||||||| || ||||| || ||||| Sbjct 429 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGCGTAGCT 488 Query 176674 GGTGTGTTTGGTGGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTT 176733 ||||| || || || || || || || ||||| || | | || || ||| | Sbjct 489 GGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTG 548 Query 176734 GTTAGAGAGACAACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAA 176793 | || || || || ||||| ||||| ||| | ||||||| |||||| ||||||||| Sbjct 549 ATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAAGAA 608 Query 176794 GAGACATACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCT 176853 || || || || || ||||| || |||||||| ||||| || | |||||||| |||||| Sbjct 609 GAAACTTATAATATCGTAGCCGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCT 668 Query 176854 TCTTTCAATAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATC 176913 |||||| ||||| | | | || |||||||| || || | || || || | ||| Sbjct 669 AGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATC 728 Query 176914 TGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAAC 176973 ||||| ||||| | ||| | |||| ||||| |||||||| || |||||||| |||||| Sbjct 729 TGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAAC 788 Query 176974 CAGTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGT 177033 || || || | || | || || ||| || |||| |||||| |||||||| Sbjct 789 CAATCAGTAGTTGATAGTCAAGGCCGTGTAATTAACACTTGGGCTGATATCATTAACCGT 848 Query 177034 GCAAACCTTGGTATGGAAGTTATGC-ACGAGCGTAATGCTCACAACTTCCCACTTGACCT 177092 || |||||||||||||||||||||| | || |||||||||||||| ||||| || ||| | Sbjct 849 GCTAACCTTGGTATGGAAGTTATGCAATGAACGTAATGCTCACAATTTCCCTCTAGACTT 908 Query 177093 TGCTGCT 177099 |||||| Sbjct 909 AGCTGCT 915 >seq2990 Length=15620 Score = 376 bits (416), Expect = 3e-99 Identities = 505/696 (73%), Gaps = 5/696 (1%) Strand=Plus/Plus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 ||||| |||| |||||||| || | ||||| || | | || || | | ||| Sbjct 14864 TTTACATTGGATGGTTTGGCGTTTTGATGATCCCTACCTTATTGACCGCAACTTC-TGTA 14922 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || ||||| || || || || ||||| || |||||||| ||||| || Sbjct 14923 TTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTT 14982 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | ||||||||||| ||||||||||| || || || || || | | || | || Sbjct 14983 TCTGGATCTCTACTTTATGGAAACAATATTATTTCGGGTGCCATTATTCCTACTTCTGCA 15042 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || || || | || || |||||||| |||||||||||| | ||||| |||||| | ||| Sbjct 15043 GCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCTGTTGATGAATGGTTATAC 15102 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 ||||| || || || |||| |||| | |||||| | | ||| | | ||||||| Sbjct 15103 AATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 15162 Query 176446 GGACGCCAATGGG-AACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATA 176504 || || | |||| ||||||||| | | || || ||||| |||||||| ||||||||| Sbjct 15163 GGTCGTGAGTGGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATA 15222 Query 176505 CTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATC 176564 || || || || | || |||| || |||||| | |||| ||| | ||||||||| Sbjct 15223 TTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAG 15282 Query 176565 TTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCA 176624 || ||||||||||||||||| || ||||| ||||| |||||||| ||| |||||||||| Sbjct 15283 CTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCA 15342 Query 176625 AGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGG 176684 || ||||||||||| || ||||||||||| || ||||| || ||||| ||||| || || Sbjct 15343 GGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGG 15402 Query 176685 TGGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGAC 176744 || || || || || ||||| || | | || || ||| | | || || || Sbjct 15403 CGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAAC 15462 Query 176745 AACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAA 176804 || ||||| ||||| ||| | ||||||| |||||| ||||||||||| || || || Sbjct 15463 CACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAAGAAGAAACTTATAA 15522 Query 176805 CATTGTAGCTGCAC-ACGG-TTACTTTGGTCGTCTT 176838 || ||||| || | |||| ||| ||||| ||| || Sbjct 15523 TATCGTAGCCGCTCTACGGTTTATTTTGGCCGTATT 15558 >seq7305 Length=44007 Score = 156 bits (172), Expect = 5e-33 Identities = 209/287 (73%), Gaps = 4/287 (1%) Strand=Plus/Minus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 ||||||||| | || || || ||||| ||| | || |||| ||| | | |||||| || Sbjct 34704 ACCTGTAACTATTCAATACCCCTACGAAAAATTGATCACGTCCGAGCGTTTCCGTGGCCG 34645 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 || |||| ||| ||||| || || || || ||||| || ||||| | ||||| ||||| Sbjct 34644 AATCCACTTTGAATTTGATAAATGCATTGCTTGTGAAGTATGTGTTCGCGTATGTCCTAT 34585 Query 19415 CAATCTACCAGTGGTGGATTGGGTGATGAACAAACAGACAA-AGAA-GAAAGAACTTAGA 19472 | ||||||| || || |||||| || | ||| || | |||| |||| | | Sbjct 34584 CGATCTACCTGTTGTTGATTGGAAATTGGA--AACTGATATTAGAAAGAAACGATTGCTT 34527 Query 19473 AATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCA 19532 ||||| || || || ||| |||||| || || ||||| ||||| |||||||| ||| Sbjct 34526 AATTACAGTATTGATTTCGGAATATGTATATTTTGTGGTAATTGCGTTGAGTATTGTCCA 34467 Query 19533 ACAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTACATTTGA 19579 ||||| ||| |||| ||||| |||||||||||| | |||| | ||| Sbjct 34466 ACAAATTGTTTATCAATGACTGAAGAATATGAACTTTCTACTTATGA 34420 >seq18988 Length=14164 Score = 107 bits (118), Expect = 2e-18 Identities = 76/87 (87%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 177013 TGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCT 177072 |||| |||||| |||||||||| ||||||||||||||||||||||| || ||||||||| Sbjct 7909 TGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 7968 Query 177073 CACAACTTCCCACTTGACCTTGCTGCT 177099 ||||| ||||| || ||| | |||||| Sbjct 7969 CACAATTTCCCTCTAGACTTAGCTGCT 7995 >seq147 Length=28199 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 177010 ACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAAT 177069 || |||| |||||| |||| ||||| |||||| |||||||||||| || || |||||| Sbjct 11594 ACTTGGGTTGATATCATTAATCGTGCTAACCTTAGTATGGAAGTTAACCATGAACGTAAT 11653 Query 177070 GCTCACAACTTCCCACTTGACCTTGCTGCT 177099 | |||||| |||| || ||| | |||||| Sbjct 11654 GATCACAAGTTCCTTCTAGACTTAGCTGCT 11683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603342960624000