Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq16006 102 6e-17 seq13411 98.7 7e-16 seq5340 98.7 7e-16 seq8384 84.2 2e-11 seq7910 84.2 2e-11 seq4675 84.2 2e-11 >seq16006 Length=16259 Score = 102 bits (112), Expect = 6e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || || ||| | || ||||| || || | || ||||||||| | Sbjct 13035 ATGCAAATCTTCGTCAAGACTTTGACAGGGAAGACCATCACTTTGGAGGTCGAAAGCTCT 13094 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| ||||| ||| || || |||||||| | ||| || | Sbjct 13095 GACACCATTGACAAC--GTCAAGGCAAAGATCCAAGATAAAGAAGGGATCCCGCCAGACC 13152 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| |||| |||||||| || || ||| | || || | | | | || |||| |||| Sbjct 13153 AGCAAAGGTTGATTTTTGCTGGCAAGCAACTCGAGGATGGCAGGACCCTGGCCGACTACA 13212 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||||||| ||| ||||||||||| | ||| | ||||| || Sbjct 13213 ACATCCAAAAAGAGTCCACATTGCATTTGGTACTCCGTCTCCGTGGTGG 13261 >seq13411 Length=19963 Score = 98.7 bits (108), Expect = 7e-16 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 |||||||| || || || ||||| | || || ||| || || | || |||||| | Sbjct 11259 AAAATGCAGATCTTCGTAAAAACCTTAACCGGCAAAACAATAACCTTAGAAGTCGAATCC 11318 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||||| || ||||| || ||| || || ||||||||||| | || | Sbjct 11319 TCCGACACAATCGACAAT--GTGAAAGCCAAGATTCAAGACAAAGAAGGCATCCCACCAG 11376 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||| ||||| ||||| || |||||| | || |||| | | || |||| | Sbjct 11377 ACCAACAACGTTTAATCTTTGCAGGCAAACAACTTGAAGACGGCAGGACATTAGCCGACT 11436 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||||||||| |||| | |||||||| || ||||| |||||||| Sbjct 11437 ACAATATCCAAAAAGAATCCACTCTTCATTTGGTCTTACGTTTACGTGGCGG 11488 >seq5340 Length=22833 Score = 98.7 bits (108), Expect = 7e-16 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 |||||||| || || || ||||| | || || ||| || || | || |||||| | Sbjct 14492 AAAATGCAGATCTTCGTAAAAACCTTAACCGGCAAAACAATAACCTTAGAAGTCGAATCC 14433 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||||| || ||||| || ||| || || ||||||||||| | || | Sbjct 14432 TCCGACACAATCGACAAT--GTGAAAGCCAAGATTCAAGACAAAGAAGGCATCCCACCAG 14375 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||| ||||| ||||| || |||||| | || |||| | | || |||| | Sbjct 14374 ACCAACAACGTTTAATCTTTGCAGGCAAACAACTTGAAGACGGCAGGACATTAGCCGACT 14315 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||||||||| |||| | |||||||| || ||||| |||||||| Sbjct 14314 ACAATATCCAAAAAGAATCCACTCTTCATTTGGTCTTACGTTTACGTGGCGG 14263 >seq8384 Length=24589 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 27784 AGTAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA 27843 || || ||||| || ||||| || ||||||||||| ||| || || | || ||||| Sbjct 3352 AGAAATATGCAGATCTTTGTTAAGACTCTTACTGGTAAAACCATCACTCTCGAAGTCGAG 3411 Query 27844 AGCACCGACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGA 27901 ||| | ||| | | | ||| || || ||||| ||||||||||| | || Sbjct 3412 AGCTCTGACACTATCGATAAT--GTTAAGGCGAAAATCCAAGACAAAGAAGGGATCCCCC 3469 Query 27902 TGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCG 27961 || ||||| |||| || ||||| ||||| || | || |||| || | |||| ||| Sbjct 3470 CAGACCAGCAGAGGTTGATCTTTGCTGGAAAGCAGCTCGAGGACGGTCGTACCTTGGCCG 3529 Query 27962 ATTACAACATCCAAAAAGA 27980 |||||||||| ||||| || Sbjct 3530 ATTACAACATTCAAAAGGA 3548 >seq7910 Length=9655 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 27784 AGTAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA 27843 || || ||||| || ||||| || ||||||||||| ||| || || | || ||||| Sbjct 1588 AGAAATATGCAGATCTTTGTTAAGACTCTTACTGGTAAAACCATCACTCTCGAAGTCGAG 1647 Query 27844 AGCACCGACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGA 27901 ||| | ||| | | | ||| || || ||||| ||||||||||| | || Sbjct 1648 AGCTCTGACACTATCGATAAT--GTTAAGGCGAAAATCCAAGACAAAGAAGGGATCCCCC 1705 Query 27902 TGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCG 27961 || ||||| |||| || ||||| ||||| || | || |||| || | |||| ||| Sbjct 1706 CAGACCAGCAGAGGTTGATCTTTGCTGGAAAGCAGCTCGAGGACGGTCGTACCTTGGCCG 1765 Query 27962 ATTACAACATCCAAAAAGA 27980 |||||||||| ||||| || Sbjct 1766 ATTACAACATTCAAAAGGA 1784 >seq4675 Length=16269 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 27784 AGTAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA 27843 || || ||||| || ||||| || ||||||||||| ||| || || | || ||||| Sbjct 15739 AGAAATATGCAGATCTTTGTTAAGACTCTTACTGGTAAAACCATCACTCTCGAAGTCGAG 15798 Query 27844 AGCACCGACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGA 27901 ||| | ||| | | | ||| || || ||||| ||||||||||| | || Sbjct 15799 AGCTCTGACACTATCGATAAT--GTTAAGGCGAAAATCCAAGACAAAGAAGGGATCCCCC 15856 Query 27902 TGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCG 27961 || ||||| |||| || ||||| ||||| || | || |||| || | |||| ||| Sbjct 15857 CAGACCAGCAGAGGTTGATCTTTGCTGGAAAGCAGCTCGAGGACGGTCGTACCTTGGCCG 15916 Query 27962 ATTACAACATCCAAAAAGA 27980 |||||||||| ||||| || Sbjct 15917 ATTACAACATTCAAAAGGA 15935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355775333259525