Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq8384 95.1 1e-14 seq7910 95.1 1e-14 seq4675 95.1 1e-14 seq8889 86.0 5e-12 >seq8384 Length=24589 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||||||| || ||| ||| || || || || ||||| ||||| || ||| | || ||| Sbjct 3794 ACCAAATGCAGTGTGGACTCCTTCTGAATGTTGTAATCAGCAAGGGTACGTCCATCCTCA 3735 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| || || || | | ||||||||| | ||| | | ||||||||| | Sbjct 3734 AGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCCTGG 3675 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTT 39252 || || |||| | | | || || |||| || || |||| ||||| || Sbjct 3674 ATCTTAGCCTTGACGTTATCGATTGTGTCAGAGCTC---TCGACTTCCAAAGTGATGGTT 3618 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| || || || ||||||||||| ||||| Sbjct 3617 TTTCCTGTGAGAGTCTTAACAAAGATCTGCAT 3586 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || ||||||||||| || | | || || || ||| Sbjct 4244 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCGGCAAGCGTCCTACCATCTTCCAGTTGT 4185 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 || || |||||||| | | ||||||||| |||||| | | ||| || ||| || || Sbjct 4184 TTACCAGCAAATATCAACCTCTGCTGGTCCGGTGGGATCCC-CTCCTTATCCTGAATCTT 4126 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| | | | ||||| ||| ||||| |||| ||||| |||| || || Sbjct 4125 GGCCTTGACATTATCAATAGTATCAGACGATTCCACCTCCAAAGTGATGGTTTTCCCTGT 4066 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 || |||||||||||||| ||||| Sbjct 4065 CAAGGTTTTAACAAAGATCTGCAT 4042 >seq7910 Length=9655 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||||||| || ||| ||| || || || || ||||| ||||| || ||| | || ||| Sbjct 2030 ACCAAATGCAGTGTGGACTCCTTCTGAATGTTGTAATCAGCAAGGGTACGTCCATCCTCA 1971 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| || || || | | ||||||||| | ||| | | ||||||||| | Sbjct 1970 AGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCCTGG 1911 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTT 39252 || || |||| | | | || || |||| || || |||| ||||| || Sbjct 1910 ATCTTAGCCTTGACGTTATCGATTGTGTCAGAGCTC---TCGACTTCCAAAGTGATGGTT 1854 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| || || || ||||||||||| ||||| Sbjct 1853 TTTCCTGTGAGAGTCTTAACAAAGATCTGCAT 1822 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || ||||||||||| || | | || || || ||| Sbjct 2480 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCGGCAAGCGTCCTACCATCTTCCAGTTGT 2421 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 || || |||||||| | | ||||||||| |||||| | | ||| || ||| || || Sbjct 2420 TTACCAGCAAATATCAACCTCTGCTGGTCCGGTGGGATCCC-CTCCTTATCCTGAATCTT 2362 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| | | | ||||| ||| ||||| |||| ||||| |||| || || Sbjct 2361 GGCCTTGACATTATCAATAGTATCAGACGATTCCACCTCCAAAGTGATGGTTTTCCCTGT 2302 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 || |||||||||||||| ||||| Sbjct 2301 CAAGGTTTTAACAAAGATCTGCAT 2278 >seq4675 Length=16269 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||||||| || ||| ||| || || || || ||||| ||||| || ||| | || ||| Sbjct 16181 ACCAAATGCAGTGTGGACTCCTTCTGAATGTTGTAATCAGCAAGGGTACGTCCATCCTCA 16122 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| || || || | | ||||||||| | ||| | | ||||||||| | Sbjct 16121 AGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCCTGG 16062 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTT 39252 || || |||| | | | || || |||| || || |||| ||||| || Sbjct 16061 ATCTTAGCCTTGACGTTATCGATTGTGTCAGAGCTC---TCGACTTCCAAAGTGATGGTT 16005 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| || || || ||||||||||| ||||| Sbjct 16004 TTTCCTGTGAGAGTCTTAACAAAGATCTGCAT 15973 >seq8889 Length=9065 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/193 (71%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || ||||| |||||||| ||| | || || | ||||| || ||||| Sbjct 2262 CTCCTTCTGAATGTTGTAATCAGCAAGTGTCCGTCCATCTTCCAATTGTTTACCGGCAAA 2203 Query 39153 TATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG 39211 || || | ||||||||| |||||| | | ||| || ||| || || |||| Sbjct 2202 GATGAGCCTCTGCTGGTCTGGTGGGATCCC-CTCCTTATCCTGAATCTTGGCCTTGACAT 2144 Query 39212 TCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | ||||| |||||||| |||| ||||| ||||||| |||| ||||||| Sbjct 2143 TGTCAATAGTATCAGAAGACTCCACCTCCAAAGTGATGGTTTTTCCTGTCAAAGTTTTAA 2084 Query 39272 CAAAGATTTGCAT 39284 |||| || ||||| Sbjct 2083 CAAA-ATCTGCAT 2072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429440505628475