Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq945 255 5e-63 seq3314 109 5e-19 >seq945 Length=6199 Score = 255 bits (282), Expect = 5e-63 Identities = 439/626 (70%), Gaps = 11/626 (2%) Strand=Plus/Minus Query 4542 AATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAAC 4601 || |||||||| ||||| ||||||||||| |||||||| |||| ||||| |||||| Sbjct 2223 AACAAACACGCGAAATCGCAATGCAAACCCTCGTCTCTCGATATCAACTCGTTTGAAAAC 2164 Query 4602 GTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAA 4661 ||||| || |||||||| || | ||||| | |||||| || ||| ||| ||| ||| Sbjct 2163 GTTAAACCCGGCATTAACCCACGTTTTTTCAACCAAAAAATCGCGCAAAAACTCCCCGAA 2104 Query 4662 AAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGAC-CCGAACGAGCTGGCTTT 4720 || ||||| ||||| ||| |||||||| | ||||| | | |||| | || | Sbjct 2103 AAAAATATCCCTTCGACGCAAGCAAACGCGA-TAATCCGTTCTGCGAAAGTTTCGGAT-- 2047 Query 4721 GTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATAT 4780 | | ||||||||| || |||||||| |||||||||| ||| || ||||| || | || Sbjct 2046 -CCATCAATCCATTTCAAAGCCCAGTTGGCTTTTTTCTCAACACAAGGAATCGTTTCAAT 1988 Query 4781 AGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCT 4840 ||| |||||| |||||||| | |||| |||||||| || | | | || Sbjct 1987 AGCCCGAAATAACCGGTTTTTTTCATTAGAATCTTTAATATAAGATTCCAACAACAAACT 1928 Query 4841 ATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAA-GCATCTAGCTT 4899 ||||||||||||||| ||||| || || || || || ||||||||||| ||| | || | Sbjct 1927 ATACATTTCAGAATGAATATTCTCAATCGCGATTTGGAATCCGTAAAACGCA-CGCGCCT 1869 Query 4900 CTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCAC 4959 | | ||||| ||||| || ||| | | | | ||||||| || || ||||| Sbjct 1868 CGGCGACTTGGACTTCTTTCATAAACCGACCAGCGAGGTTTTCGAGAACGATGCCGTCTG 1809 Query 4960 TGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTC-AGGCTTAAGTTTT 5018 || || ||||| || | || |||| || |||| ||||| | | ||||| Sbjct 1808 ACGCGGCGAAAAAAGCGAGGACGTGAGTAATGAAGTGGCGTTCGCCGTCGGTTAAG-GCG 1750 Query 5019 TTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCC 5078 | |||||| | ||||| | |||||| |||||||| | |||||||| || ||||| Sbjct 1749 TCCCAGTGACGTTGATCTTCGGATAAATCGACTTCTTCGGCGGTCCAAAATGAGGCTTCG 1690 Query 5079 GCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACA-AATCTGTT 5137 |||||||| ||||| ||| || | || || ||||| || | || ||| |||| | Sbjct 1689 GCTTTTTTATACATTTCCCAGATTTGTGGGTATTGAATTGGGAACAT-ACAGAATCGATC 1631 Query 5138 GTCGTTAGGTGTAAGAAGCGGTTCTT 5163 ||| |||| | ||| ||||||| Sbjct 1630 TGGGTTTGGTGCCAAAAGTGGTTCTT 1605 >seq3314 Length=31422 Score = 109 bits (120), Expect = 5e-19 Identities = 292/439 (67%), Gaps = 8/439 (2%) Strand=Plus/Plus Query 4728 ATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTA 4787 ||||| || | ||||| || || || || | ||| |||||||| || | ||||| | Sbjct 22876 ATCCACTTAAGCGCCCAATTGGCCTTCTTTTGAACACACGGAATAGTTTCAATAGCACGA 22935 Query 4788 AATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATT 4847 || | | || |||||| | || | |||||||| || | || | ||||||||| Sbjct 22936 AACAGCCTGCTCTTTTCACTAGAATCCTTAATATAAGATTCCAAAAGCAAACTATACATT 22995 Query 4848 TCAGAATGTATATTTTCTATAGCAATCTGAAATCCGT-AAAAGCATCTAGCTTCTGTTAC 4906 || ||||| ||||| || || ||||||||||| |||| ||||||| | || || | | Sbjct 22996 TCCGAATGGATATTCTCAATGGCAATCTGAAACCCGTAAAAAGCA-CGTGCCTCGGCGAT 23054 Query 4907 TTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGC 4966 || | || || ||| ||| | || ||||| || || || || || || Sbjct 23055 CTGTATCTCTTTCATAAACCTTGAAGCCAAATTTTCCAAAACAATTCCATCTGATGCGGC 23114 Query 4967 AAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGC--TTAA-GTTTTTTCCA 5023 ||||| || | ||| |||| | |||| ||||| | | | |||| | | | | Sbjct 23115 GAAAAATGCGAGAACGTGAGTCACGAAGTGACGTTCG-CCGTCTGTTAACGACTCGT--A 23171 Query 5024 GTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTT 5083 || | |||| | |||||| |||||||| | |||||||| || ||||| ||||| Sbjct 23172 ATGACGTTGGTCTTGCGATAAATCGACTTCTTCTGCTGTCCAAAATGAGGCTTCGGCTTT 23231 Query 5084 TTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCTGTTGTCGTT 5143 ||||||||| |||||| | || || || || |||| ||| ||||||| || Sbjct 23232 TTTGTACATTTCCCAAATTTGTGGGTATTGGATTGGAAACATGCAGAATCTGTCTGGATT 23291 Query 5144 AGGTGTAAGAAGCGGTTCT 5162 ||||| | ||| || ||| Sbjct 23292 TGGTGTTAAAAGTGGCTCT 23310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426945116309975