Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq945 253 3e-62 seq3314 158 2e-33 seq14165 100 4e-16 seq4091 100 4e-16 >seq945 Length=6199 Score = 253 bits (280), Expect = 3e-62 Identities = 607/903 (67%), Gaps = 34/903 (4%) Strand=Plus/Minus Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 47908 ||| ||||| || || || | |||||| ||||||||||| || || | ||| || || Sbjct 2509 TTTCTGATACTCCCCAACCCTTTTCTCAAAAAAATTAGTCTTCCCCTGCAACGAGATCAA 2450 Query 47909 TTCCATAAAATCAAATGGATTAACTGCA--TTATAAAtttttttAAATCCTAATTCTGAA 47966 ||||| ||||||| ||||| ||||| ||||| |||||| | | || || | Sbjct 2449 CTCCATCCAATCAAACGGATT--CTGCACATTATACATTTTTGAATAACCCAACGCCCCC 2392 Query 47967 ATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATA 48026 | || ||||| || || | || ||||| |||||| || | |||||| || | Sbjct 2391 AACAACCTATCCGCGACATACTCAATATAAACACTCATCAAATCCCCATTCATCCCAACC 2332 Query 48027 AGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATT 48086 | | || | ||||| || ||||| |||||| | ||||| || | || Sbjct 2331 AAAGCACACGGCAACGCCTCGCAAACGAACTCCCTTTCGATGTTTACAGCGTCTGCGATA 2272 Query 48087 ATCGATGTTACCGTTTCCTCACTTGG-TGGATA--CAACAAA-TGTTTAAACATTAAACA 48142 ||| | |||| ||||||||| | || ||||||| ||| ||| ||||| Sbjct 2271 ATCCCTTTTACGCGTTCCTCACTCAACTTCATTTTCAACAAACTGTATAAC----AAACA 2216 Query 48143 TGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACC 48202 || ||||| ||||| | ||| || ||||| || || ||||| ||||| || | ||| Sbjct 2215 CGCGAAATCGCAATGCAAACCCTCGTCTCTCGATATCAACTCGTTTGAAAACGTTAAACC 2156 Query 48203 GGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAATA 48261 ||||||| ||||||||||| | |||||| || | ||| ||| | || ||||| |||| Sbjct 2155 CGGCATTAACCCACGTTTTTTCAACCAAAAAATCG-CGCAAAAACTCCCCGAAAAAAATA 2097 Query 48262 TGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTATCC 48321 | ||||| ||| ||||| ||| ||| | ||| || || | |||| | ||| Sbjct 2096 TCCCTTCGACGCAAGCAAACGCGATAATCCGTTCTGCGAAA---GTTTCG-GATCCATCA 2041 Query 48322 A-CCGTT---GTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 48377 | || || ||||| | || || |||| |||||||| || ||||| ||||| | Sbjct 2040 ATCCATTTCAAAGCCCAGTTGGCTTTTTTCTCAACACAAGGAATCGTTTCAATAGCCCGA 1981 Query 48378 AAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATT 48437 || | |||||||||||| |||||||| |||| || | || | |||||||||| Sbjct 1980 AATAACCGGTTTTTTTCATTAGAATCTTTAATATAAGATTCCAACAACAAACTATACATT 1921 Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497 || || |||||||| ||||| || || || ||||||||||| | ||| || | || Sbjct 1920 TCAGAATGAATATTCTCAATCGCGATTTGGAATCCGTAAAACGCACGCGCCTCGGCGACT 1861 Query 48498 TGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCA 48557 || || || | ||| || |||| | || || || || || || || || Sbjct 1860 TGGACTTCTTTCATAAACCGACCAGCGAGGTTTTCGAGAACGATGCCGTCTGACGCGGCG 1801 Query 48558 AAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTA----TTCCA 48613 ||||| || | || || |||| || | |||| | ||| ||| | | ||| Sbjct 1800 AAAAAAGCGAGGACGTGAGTAATGAA----GTGGCGTTCGCCGTCGGTTAAGGCGTCCCA 1745 Query 48614 GT--CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCT 48671 || | ||| ||||| |||| ||| |||||||| || ||||||||||| || || ||| Sbjct 1744 GTGACGTTG--ATCTTCGGATAAATCGACTTCTTCGGCGGTCCAAAATGAGGCTTCGGCT 1687 Query 48672 TTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGA 48731 ||||||||||| | ||| || | |||||| |||||||| ||| |||| || ||| Sbjct 1686 TTTTTATACATTTCCCAGATTTGTGGGTATTGAATTGGGAACATACAGAATCGATCTGGG 1627 Query 48732 TTT 48734 ||| Sbjct 1626 TTT 1624 >seq3314 Length=31422 Score = 158 bits (174), Expect = 2e-33 Identities = 283/411 (69%), Gaps = 12/411 (3%) Strand=Plus/Plus Query 48330 GCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt 48389 ||||||| |||||||| | ||||| || || ||||| |||||| ||| || | | Sbjct 22888 GCCCAATTGGCCTTCTTTTGAACACACGGAATAGTTTCAATAGCACGAAACAGCCTGCTC 22947 Query 48390 ttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATA 48449 |||||| | ||| |||| |||| || | | | |||||||||||| || || ||| Sbjct 22948 TTTTCACTAGAATCCTTAATATAAGATTCCAAAAGCAAACTATACATTTCCGAATGGATA 23007 Query 48450 TTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTA 48509 || ||||| || |||||||| ||||||||| | || || | |||||||| ||| | Sbjct 23008 TTCTCAATGGCAATCTGAAACCCGTAAAAAGCACGTGCCTCGGCGATCTGTATCTCTTTC 23067 Query 48510 CAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAAT 48569 ||| | | ||||||||| || || |||||||| || || |||||||| | Sbjct 23068 ATAAACCTTGAAGCCAAATTTTCCAAAACAATTCCATCTGATGCGGCGAAAAATGCGAGA 23127 Query 48570 ACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTC--ATTGA----TA 48623 || || | | || | |||| | ||| ||| | | | || | ||| Sbjct 23128 ACGTGAGTCACGAA----GTGACGTTCGCCGTCTGTTAA--CGACTCGTAATGACGTTGG 23181 Query 48624 TCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATA 48683 |||| |||| ||| |||||||| |||||||||||||| || || |||||||| ||||| Sbjct 23182 TCTTGCGATAAATCGACTTCTTCTGCTGTCCAAAATGAGGCTTCGGCTTTTTTGTACATT 23241 Query 48684 TTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTT 48734 | ||| || | |||||||||||| || || ||||| | ||||||| Sbjct 23242 TCCCAAATTTGTGGGTATTGGATTGGAAACATGCAGAATCTGTCTGGATTT 23292 >seq14165 Length=56756 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 |||||| ||||| | ||||| ||| || | |||| | || | || |||||| | ||| || Sbjct 34420 ACCTCCTTGATCAACATATCGGGCAGTATCATTAAACACACGCAGCATTGGCACAATGCC 34479 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || ||||||||||| |||||| || || |||||| |||| || |||||| ||| || Sbjct 34480 ATTGGATGTTCCATTCGTTCCACGTATGTAGCTTCCAGTTGCACGGATATTATGAATAGA 34539 Query 78278 TATCCCTATTCCTCCTGC 78295 | || ||||||||||| Sbjct 34540 AACACCAATTCCTCCTGC 34557 >seq4091 Length=20028 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 |||||| ||||| | ||||| ||| || | |||| | || | || |||||| | ||| || Sbjct 16136 ACCTCCTTGATCAACATATCGGGCAGTATCATTAAACACACGCAGCATTGGCACAATGCC 16195 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || ||||||||||| |||||| || || |||||| |||| || |||||| ||| || Sbjct 16196 ATTGGATGTTCCATTCGTTCCACGTATGTAGCTTCCAGTTGCACGGATATTATGAATAGA 16255 Query 78278 TATCCCTATTCCTCCTGC 78295 | || ||||||||||| Sbjct 16256 AACACCAATTCCTCCTGC 16273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694494481548000