Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq945 215 7e-51 seq3314 147 3e-30 seq14165 136 6e-27 seq4091 136 6e-27 >seq945 Length=6199 Score = 215 bits (238), Expect = 7e-51 Identities = 594/899 (66%), Gaps = 26/899 (3%) Strand=Plus/Minus Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397 ||| || || || || || | |||||| ||||||||||| || || | ||| || || Sbjct 2509 TTTCTGATACTCCCCAACCCTTTTCTCAAAAAAATTAGTCTTCCCCTGCAACGAGATCAA 2450 Query 46398 TTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAAT 46457 ||||| ||||||||||||| |||||||| |||||| | | || || | | Sbjct 2449 CTCCATCCAATCAAACGGATTCTGCACATTATACATTTTTGAATAACCCAACGCCCCCAA 2390 Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517 || ||||| || || | || ||||| |||||| || | |||||| || | | Sbjct 2389 CAACCTATCCGCGACATACTCAATATAAACACTCATCAAATCCCCATTCATCCCAACCAA 2330 Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT 46577 ||| | ||||| || ||||| ||| || | ||||| || | || || Sbjct 2329 AGCACACGGCAACGCCTCGCAAACGAACTCCCTTTCGATGTTTACAGCGTCTGCGATAAT 2270 Query 46578 CGATGTTACTGTTTCCTCACTTGG-TGGATG--CATCAAA-TGTTTAAACATTAAACATG 46633 | | |||| ||||||||| | || || |||| ||| ||| ||||| | Sbjct 2269 CCCTTTTACGCGTTCCTCACTCAACTTCATTTTCAACAAACTGTATAAC----AAACACG 2214 Query 46634 CAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAG 46693 | ||||| ||||| | || || ||||| || || ||||| ||||| || | || | Sbjct 2213 CGAAATCGCAATGCAAACCCTCGTCTCTCGATATCAACTCGTTTGAAAACGTTAAACCCG 2154 Query 46694 GCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCA-GAAAAGAATATG 46752 |||||| ||||| ||||| | |||||| || || || ||| ||| ||||| ||||| Sbjct 2153 GCATTAACCCACGTTTTTTCAACCAAAAAATCGC-GCAAAAACTCCCCGAAAAAAATATC 2095 Query 46753 CCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGC--ATCATTATGAATCC 46810 ||||| || || || |||| || | ||| || || | | ||| || ||||| Sbjct 2094 CCTTCGACGCAAGCAAACGCGATAATCCGTTCTGCGAAAGTTTCGGATCC--ATCAATCC 2037 Query 46811 ACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 46870 | | |||||| | || ||||||| |||||||| || ||||| ||||| ||| | Sbjct 2036 ATTTCAAAGCCCAGTTGGCTTTTTTCTCAACACAAGGAATCGTTTCAATAGCCCGAAATA 1977 Query 46871 GAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTG 46930 ||||||||||| | |||||||| ||| | || | || | |||||||||||| | Sbjct 1976 ACCGGTTTTTTTCATTAGAATCTTTAATATAAGATTCCAACAACAAACTATACATTTCAG 1917 Query 46931 AATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTA 46990 ||||||| || ||||| || || || ||||||||||| | || || | | || | Sbjct 1916 AATGAATATTCTCAATCGCGATTTGGAATCCGTAAAACGCACGCGCCTCGGCGACTTGGA 1857 Query 46991 CCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAA 47050 | ||| | ||| || ||| | || || || || || || || || |||| Sbjct 1856 CTTCTTTCATAAACCGACCAGCGAGGTTTTCGAGAACGATGCCGTCTGACGCGGCGAAAA 1797 Query 47051 ATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTA----TTCCAGT-- 47104 | || | || || |||| || | ||| | ||| ||| | | ||||| Sbjct 1796 AAGCGAGGACGTGAGTAATGAAGTGGCGTTC----GCCGTCGGTTAAGGCGTCCCAGTGA 1741 Query 47105 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTT 47164 | ||| ||||| |||| ||| |||||||| || ||||| ||||| || || ||||||| Sbjct 1740 CGTTG--ATCTTCGGATAAATCGACTTCTTCGGCGGTCCAAAATGAGGCTTCGGCTTTTT 1683 Query 47165 TATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTT 47223 ||||||| | ||| || | | ||||| || || || ||| |||| || ||| ||| Sbjct 1682 TATACATTTCCCAGATTTGTGGGTATTGAATTGGGAACATACAGAATCGATCTGGGTTT 1624 >seq3314 Length=31422 Score = 147 bits (162), Expect = 3e-30 Identities = 288/423 (68%), Gaps = 12/423 (3%) Strand=Plus/Plus Query 46807 ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTA 46866 |||||| | | ||||||| ||||| || | ||||| || || ||||| |||||| | Sbjct 22876 ATCCACTTAAGCGCCCAATTGGCCTTCTTTTGAACACACGGAATAGTTTCAATAGCACGA 22935 Query 46867 AAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATT 46926 || || | | |||||| | ||| |||| ||| | || | | | |||||||||| Sbjct 22936 AACAGCCTGCTCTTTTCACTAGAATCCTTAATATAAGATTCCAAAAGCAAACTATACATT 22995 Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986 || ||||| || || ||||| || |||||||| ||||||||| | ||| || | ||| Sbjct 22996 TCCGAATGGATATTCTCAATGGCAATCTGAAACCCGTAAAAAGCACGTGCCTCGGCGATC 23055 Query 46987 TGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCA 47046 |||| |||| | ||| | | || |||||| || || |||||||| || || Sbjct 23056 TGTATCTCTTTCATAAACCTTGAAGCCAAATTTTCCAAAACAATTCCATCTGATGCGGCG 23115 Query 47047 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTC- 47105 |||||||| | || || | | || | ||| | ||| ||| | | | || Sbjct 23116 AAAAATGCGAGAACGTGAGTCACGAAGTGACGTTC----GCCGTCTGTTAA--CGACTCG 23169 Query 47106 -ATTGA----TATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCT 47160 | ||| |||| |||| ||| |||||||| |||||||| ||||| || || ||| Sbjct 23170 TAATGACGTTGGTCTTGCGATAAATCGACTTCTTCTGCTGTCCAAAATGAGGCTTCGGCT 23229 Query 47161 TTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGA 47220 ||||| ||||| | ||| || | | |||||||| ||||| || ||||| | |||| Sbjct 23230 TTTTTGTACATTTCCCAAATTTGTGGGTATTGGATTGGAAACATGCAGAATCTGTCTGGA 23289 Query 47221 TTT 47223 ||| Sbjct 23290 TTT 23292 >seq14165 Length=56756 Score = 136 bits (150), Expect = 6e-27 Identities = 164/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||| ||||| | ||||| |||||| | |||| | || | || |||||| | |||||| Sbjct 34420 ACCTCCTTGATCAACATATCGGGCAGTATCATTAAACACACGCAGCATTGGCACAATGCC 34479 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| ||||| |||||| || || |||||| |||||| |||||| |||||| Sbjct 34480 ATTGGATGTTCCATTCGTTCCACGTATGTAGCTTCCAGTTGCACGGATATTATGAATAGA 34539 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || ||||||||||| ||| || | |||||| || || |||||||| || Sbjct 34540 AACACCAATTCCTCCTGCTGATTTGCTAATAACAGCACATTCCTTTAACGTGTCATATAT 34599 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||| || || ||||| || ||||| | || ||||||||| Sbjct 34600 GCCTTCAATGCTATCTTCTTTCATGCATATCAGGAAACAGCTA 34642 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| ||||| || | || ||||||||||| ||||||||| | | || | | | | Sbjct 34799 GTTCCGGCATTGAAAAGGGTGGGAGATGCATGGGTGAACCATCTCTGTGACATCAAGTGG 34858 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||| | | ||| | || ||||| | |||||| || ||||| || | ||| ||| Sbjct 34859 TATGTCTTGAGAACAGAATCAATATCATCCTTATGAATCCCAACAGCAACTCTCATTAAC 34918 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 || || ||||||| ||||||| ||| ||| || ||||| | || ||| | || | Sbjct 34919 ATGTGTTGAGGTCTTTCTACAACCTTCCCATTGATCTTCAAAAGATAAGATCTCTCAAGG 34978 Query 77174 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| |||||||| | | || |||||| | || || ||||| Sbjct 34979 GTTTTGAAACCAAAGAAATCATAGTCAAAGTCCCGGTCATATATAAT 35025 >seq4091 Length=20028 Score = 136 bits (150), Expect = 6e-27 Identities = 164/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||| ||||| | ||||| |||||| | |||| | || | || |||||| | |||||| Sbjct 16136 ACCTCCTTGATCAACATATCGGGCAGTATCATTAAACACACGCAGCATTGGCACAATGCC 16195 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| ||||| |||||| || || |||||| |||||| |||||| |||||| Sbjct 16196 ATTGGATGTTCCATTCGTTCCACGTATGTAGCTTCCAGTTGCACGGATATTATGAATAGA 16255 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || ||||||||||| ||| || | |||||| || || |||||||| || Sbjct 16256 AACACCAATTCCTCCTGCTGATTTGCTAATAACAGCACATTCCTTTAACGTGTCATATAT 16315 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||| || || ||||| || ||||| | || ||||||||| Sbjct 16316 GCCTTCAATGCTATCTTCTTTCATGCATATCAGGAAACAGCTA 16358 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| ||||| || | || ||||||||||| ||||||||| | | || | | | | Sbjct 16516 GTTCCGGCATTGAAAAGGGTGGGAGATGCATGGGTGAACCATCTCTGTGACATCAAGTGG 16575 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||| | | ||| | || ||||| | |||||| || ||||| || | ||| ||| Sbjct 16576 TATGTCTTGAGAACAGAATCAATATCATCCTTATGAATCCCAACAGCAACTCTCATTAAC 16635 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 || || ||||||| ||||||| ||| ||| || ||||| | || ||| | || | Sbjct 16636 ATGTGTTGAGGTCTTTCTACAACCTTCCCATTGATCTTCAAAAGATAAGATCTCTCAAGG 16695 Query 77174 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| |||||||| | | || |||||| | || || ||||| Sbjct 16696 GTTTTGAAACCAAAGAAATCATAGTCAAAGTCCCGGTCATATATAAT 16742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712755498024000