Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq13106 152 5e-32 seq8473 152 5e-32 seq8384 95.1 1e-14 seq7910 95.1 1e-14 seq5280 95.1 1e-14 seq4675 95.1 1e-14 seq10926 93.3 4e-14 seq8889 87.8 2e-12 >seq13106 Length=76417 Score = 152 bits (168), Expect = 5e-32 Identities = 177/237 (75%), Gaps = 10/237 (4%) Strand=Plus/Minus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 ||||||| || ||||| | || ||||| || ||| ||||||||| ||||| ||||||| Sbjct 56356 CGCCGCCACGAAGACGGAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 56297 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 ||||||||| |||| |||||||||||||||||||| || || || || ||||| | | Sbjct 56296 CGAGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGTG 56237 Query 41754 GAACGCTCTCCTTGTCCATGATTTT----TTG-CTTCAACGACGACACAGTGTCGCTCGA 41808 | | || |||||||| ||| || ||| | | | ||| | |||||| || Sbjct 56236 GGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTATCGATG-----GTGTCGGAAGA 56182 Query 41809 CTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| ||||| | |||||||| || ||||| || || || ||||| ||||||||||| Sbjct 56181 CTCAACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATGTT 56125 >seq8473 Length=8692 Score = 152 bits (168), Expect = 5e-32 Identities = 177/237 (75%), Gaps = 10/237 (4%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 ||||||| || ||||| | || ||||| || ||| ||||||||| ||||| ||||||| Sbjct 5352 CGCCGCCACGAAGACGGAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 5411 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 ||||||||| |||| |||||||||||||||||||| || || || || ||||| | | Sbjct 5412 CGAGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGTG 5471 Query 41754 GAACGCTCTCCTTGTCCATGATTTT----TTG-CTTCAACGACGACACAGTGTCGCTCGA 41808 | | || |||||||| ||| || ||| | | | ||| | |||||| || Sbjct 5472 GGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTATCGATG-----GTGTCGGAAGA 5526 Query 41809 CTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| ||||| | |||||||| || ||||| || || || ||||| ||||||||||| Sbjct 5527 CTCAACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATGTT 5583 >seq8384 Length=24589 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| |||||| ||| ||||||||||||||| || || | Sbjct 3812 CCACCACGGAGACGGAGAACCAAATGCAGTGTGGACTCCTTCTGAATGTTGTAATCAGCA 3753 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || ||||||||||| ||||| |||| | ||| ||||| | ||| Sbjct 3752 AGGGTACGTCCATCCTCAAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCTGGGGGG 3693 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | || |||||| || | || || | ||| | | ||||| ||| ||| Sbjct 3692 ATACCTTCTTTGTCC-TGGATCTTAGCCTTGACGTTATCGATTGTGTCAGAGCT---CTC 3637 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| || || ||||| || || || ||||| || || |||||||| Sbjct 3636 GACTTCCAAAGTGATGGTTTTTCCTGTGAGAGTCTTAACAAAGATCTGCAT 3586 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| || || || ||| ||||||||||||||| || |||| Sbjct 4268 CCACCACGAAGACGGAGCACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCGGCA 4209 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | | || || || || || || || ||||||| | ||| ||||||| || Sbjct 4208 AGCGTCCTACCATCTTCCAGTTGTTTACCAGCAAATATCAACCTCTGCTGGTCCGGTGGG 4149 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||| ||| ||| | || || | || | | ||| || ||| ||||| Sbjct 4148 ATCCCCTCCTTATCC-TGAATCTTGGCCTTGACATTATCAATAGTATCAGACGATTCCAC 4090 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || ||||| || |||| || || || || |||||||| Sbjct 4089 CTCCAAAGTGATGGTTTTCCCTGTCAAGGTTTTAACAAAGATCTGCAT 4042 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||||||| || || |||||||||||||||||| || | Sbjct 4040 CCACCACGAAGACGAAGAACCAGATGGAGGGTAGACTCCTTCTGAATGTTATAATCAGCC 3981 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || |||| || ||||||||||| || || |||| | ||| ||||| | || Sbjct 3980 AAAGTACGTCCGTCCTCAAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGG 3921 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CTCC 41812 | | ||||| | | || | ||||| | ||| | || | || | ||| ||| Sbjct 3920 ATTCCTTCCTTAT-CTTGGATCTTTGCCTTGACGTTGTCA-ATGGTATC-CGAACTCTCA 3864 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| || || ||||| || |||| || || || || |||||||| Sbjct 3863 ACCTCCAAAGTAATTGTTTTTCCTGTCAAGGTTTTCACAAATATCTGCAT 3814 >seq7910 Length=9655 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| |||||| ||| ||||||||||||||| || || | Sbjct 2048 CCACCACGGAGACGGAGAACCAAATGCAGTGTGGACTCCTTCTGAATGTTGTAATCAGCA 1989 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || ||||||||||| ||||| |||| | ||| ||||| | ||| Sbjct 1988 AGGGTACGTCCATCCTCAAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCTGGGGGG 1929 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | || |||||| || | || || | ||| | | ||||| ||| ||| Sbjct 1928 ATACCTTCTTTGTCC-TGGATCTTAGCCTTGACGTTATCGATTGTGTCAGAGCT---CTC 1873 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| || || ||||| || || || ||||| || || |||||||| Sbjct 1872 GACTTCCAAAGTGATGGTTTTTCCTGTGAGAGTCTTAACAAAGATCTGCAT 1822 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| || || || ||| ||||||||||||||| || |||| Sbjct 2504 CCACCACGAAGACGGAGCACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCGGCA 2445 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | | || || || || || || || ||||||| | ||| ||||||| || Sbjct 2444 AGCGTCCTACCATCTTCCAGTTGTTTACCAGCAAATATCAACCTCTGCTGGTCCGGTGGG 2385 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||| ||| ||| | || || | || | | ||| || ||| ||||| Sbjct 2384 ATCCCCTCCTTATCC-TGAATCTTGGCCTTGACATTATCAATAGTATCAGACGATTCCAC 2326 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || ||||| || |||| || || || || |||||||| Sbjct 2325 CTCCAAAGTGATGGTTTTCCCTGTCAAGGTTTTAACAAAGATCTGCAT 2278 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||||||| || || |||||||||||||||||| || | Sbjct 2276 CCACCACGAAGACGAAGAACCAGATGGAGGGTAGACTCCTTCTGAATGTTATAATCAGCC 2217 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || |||| || ||||||||||| || || |||| | ||| ||||| | || Sbjct 2216 AAAGTACGTCCGTCCTCAAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGG 2157 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CTCC 41812 | | ||||| | | || | ||||| | ||| | || | || | ||| ||| Sbjct 2156 ATTCCTTCCTTAT-CTTGGATCTTTGCCTTGACGTTGTCA-ATGGTATC-CGAACTCTCA 2100 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| || || ||||| || |||| || || || || |||||||| Sbjct 2099 ACCTCCAAAGTAATTGTTTTTCCTGTCAAGGTTTTCACAAATATCTGCAT 2050 >seq5280 Length=29361 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||||||| || || ||| ||||| ||||| || || | Sbjct 6770 CCACCACGGAGACGAAGAACCAGATGGAGGGTAGACTCTTTCTGGATGTTGTAATCAGCA 6711 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || ||||||||||| || || |||| | ||| ||||| | ||| Sbjct 6710 AGGGTACGTCCGTCCTCAAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGG 6651 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | || ||||||||| || | || || | ||| | | ||||| ||| ||| Sbjct 6650 ATGCCTTCCTTGTCC-TGGATCTTGGCCTTAACATTATCGATTGTGTCAGAGCT---CTC 6595 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| || || ||||| || |||| ||||| || || |||||||| Sbjct 6594 GACCTCCAAAGTGATGGTTTTCCCTGTCAAAGTCTTGACAAAGATCTGCAT 6544 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| ||||| || ||| |||||||||||| || || || | Sbjct 6998 CCACCACGAAGACGGAGCACAAGATGAAGGGTGGACTCCTTCTGAATATTGTAATCTGCA 6939 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || | || || || ||||| |||| | ||| || || | || Sbjct 6938 AGTGTACGTCCATCTTCCAATTGTTTCCCAGCGAAGATCAACCTCTGCTGATCTGGTGGG 6879 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACA-GTGTCGCTCGACTCCAC 41814 | | |||||| ||| ||| | || || | || | || || || |||||||| Sbjct 6878 ATCCCCTCCTTATCC-TGAATCTTGGCCTTGACATTGTCAATCGTATCAGAAGACTCCAC 6820 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || ||||| || |||| ||||| || ||||||||||| Sbjct 6819 CTCCAAAGTGATGGTTTTCCCTGTCAAGGTCTTCACAAAAATCTGCAT 6772 >seq4675 Length=16269 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| |||||| ||| ||||||||||||||| || || | Sbjct 16199 CCACCACGGAGACGGAGAACCAAATGCAGTGTGGACTCCTTCTGAATGTTGTAATCAGCA 16140 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || ||||||||||| ||||| |||| | ||| ||||| | ||| Sbjct 16139 AGGGTACGTCCATCCTCAAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCTGGGGGG 16080 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | || |||||| || | || || | ||| | | ||||| ||| ||| Sbjct 16079 ATACCTTCTTTGTCC-TGGATCTTAGCCTTGACGTTATCGATTGTGTCAGAGCT---CTC 16024 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| || || ||||| || || || ||||| || || |||||||| Sbjct 16023 GACTTCCAAAGTGATGGTTTTTCCTGTGAGAGTCTTAACAAAGATCTGCAT 15973 >seq10926 Length=11099 Score = 93.3 bits (102), Expect = 4e-14 Identities = 163/231 (71%), Gaps = 10/231 (4%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||||| |||| ||||| || |||||||| ||||||||||| | Sbjct 8484 CCACCACGAAGACGTAGGACCAAGTGCAGAGTCGATTCCTTCTGGATGTTATAGTCTGCC 8543 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| | || || ||||||||||| || || |||| | ||| ||||| | || Sbjct 8544 AAGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGG 8603 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | |||||||||| ||| | || || | ||| | | | ||||| ||| || Sbjct 8604 ATACCCTCCTTGTCC-TGAATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCT---TTC 8659 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| || || || || || |||| ||||| ||||| |||||||| Sbjct 8660 GACCTCCA-AGTGAT-GTCTTCCCGGTCAAAGTCTTGACGAAGATCTGCAT 8708 >seq8889 Length=9065 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/234 (69%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||||||| || || |||||| || ||||| ||||| | Sbjct 1842 CCACCACGAAGACGGAGGACCAGATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCTGCC 1783 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || | | || || |||||||| || || || |||| | ||| ||||| | ||| Sbjct 1782 AACGTTCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCTCTGCTGGTCTGGGGGG 1723 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACAC-AGTGTC---GCTCGACTC 41811 | | ||||| || ||| | ||||||| || | || |||||| ||| || Sbjct 1722 ATACCTTCCTTATCT-TGAATCTTTGCTTTGACATTGTCAATAGTGTCAGAGCTT---TC 1667 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||||| || || ||||| || |||| ||||| ||||| ||||||||||| Sbjct 1666 GACCTCCAAAGTGATGGTTTTCCCTGTCAATGTCTTGACGAAGATCTGCATGTT 1613 Score = 82.4 bits (90), Expect = 7e-11 Identities = 158/229 (69%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||| || || || || ||||||||||||||| || || | Sbjct 2298 GCCACCACGAAGACGGAGCACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGC 2239 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || | || || | || || ||||| || || || | ||| ||||| | || Sbjct 2238 AAGTGTCCGTCCATCTTCCAATTGTTTACCGGCAAAGATGAGCCTCTGCTGGTCTGGTGG 2179 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | |||||| ||| ||| | || || | || | | | ||| || ||||||| Sbjct 2178 GATCCCCTCCTTATCC-TGAATCTTGGCCTTGACATTGTCAATAGTATCAGAAGACTCCA 2120 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| || || ||||| || |||| || |||| ||||||||||| Sbjct 2119 CCTCCAAAGTGATGGTTTTTCCTGTCAAAGT-TTTAACAAAATCTGCAT 2072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462187990590000