Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq6 105 1e-17 seq16619 104 5e-17 seq63 104 5e-17 seq29 104 5e-17 seq21 104 5e-17 seq14 104 5e-17 seq8 104 5e-17 seq7 104 5e-17 seq2 104 5e-17 seq5 100 6e-16 seq23 84.2 5e-11 >seq6 Length=8244739 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 1605274 TGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1605333 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 1605334 CCCCACGGTGGGC 1605346 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 2820614 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2820555 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2820554 CCCACGGTGGGC 2820543 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 1605802 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1605861 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 1605862 CCCCACGGTGGGC 1605874 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||| | Sbjct 1605466 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAAC 1605525 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1605526 CCCACGGTGGGC 1605537 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 2818964 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2818905 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2818904 CCCACGGTGGGC 2818893 >seq16619 Length=329 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 103 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 44 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 43 CCCACGGTGGGC 32 >seq63 Length=2026059 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 620131 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 620072 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 620071 CCCACGGTGGGC 620060 >seq29 Length=4237707 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 3792121 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3792062 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3792061 CCCACGGTGGGC 3792050 >seq21 Length=5552556 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 1857798 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1857739 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1857738 CCCACGGTGGGC 1857727 >seq14 Length=6093421 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 468558 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 468499 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 468498 CCCACGGTGGGC 468487 >seq8 Length=7373812 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 3021286 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3021345 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3021346 CCCACGGTGGGC 3021357 >seq7 Length=7328097 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 525336 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 525277 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 525276 CCCACGGTGGGC 525265 >seq2 Length=2963668 Score = 104 bits (114), Expect = 5e-17 Identities = 82/97 (85%), Gaps = 1/97 (1%) Strand=Plus/Minus Query 165685 AGAAGTCGGCGGACTTAAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTT 165744 |||| || |||| ||| || | ||||||||||||||||||||||||||| || || | Sbjct 2910465 AGAATTCAGCGGT-TTATAATGTGGGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCT 2910407 Query 165745 TAATCTGGTGGTCGTGGGTTCGAGCCCCACGATGGGC 165781 ||| || |||||||||||||||||||||||| ||||| Sbjct 2910406 TAACCTTGTGGTCGTGGGTTCGAGCCCCACGGTGGGC 2910370 >seq5 Length=8749421 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||||||||||||||| || || |||| || |||||||||||||||| Sbjct 6220138 TGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAA 6220079 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 6220078 CCCCACGGTGGGC 6220066 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 5682187 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5682128 Query 165770 CCCACGATGGGC 165781 | |||| ||||| Sbjct 5682127 CTCACGGTGGGC 5682116 >seq23 Length=5684809 Score = 84.2 bits (92), Expect = 5e-11 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 230390 TTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTT 230448 |||| || || || || | || | ||| ||| ||||||| ||| | || || || ||| Sbjct 1473501 TTACGGAGGCCGTGGATATAGAGAGGGAATTCGTTTGTGATGCTTTGCCG-GTGGCTCTT 1473559 Query 230449 ATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTT 230508 |||| ||||| | || | ||| | || ||||| ||||| || || || | | || Sbjct 1473560 GTTGGAATGAATGGAGATTTGATGAGTCAATACATTGAATTTGTGGCGGATAGGTTGGTT 1473619 Query 230509 GTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTC 230568 | || | || ||||||||| | || || | | ||||| |||| | |||||| | Sbjct 1473620 GGAACATTGGGGTACGAGAAAATCTATAATGTTCAAAACCCATTTGATTGGATGGAGTTG 1473679 Query 230569 ATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAA 230603 |||||| | ||||||||||| || ||||| || || Sbjct 1473680 ATTTCGTTGCAAGGGAAGACTAATTTCTTTGAGAA 1473714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057397556766320