Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq23 125 7e-24 >seq23 Length=5684809 Score = 125 bits (138), Expect = 7e-24 Identities = 562/876 (64%), Gaps = 26/876 (3%) Strand=Plus/Minus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 ||||||| || | ||| | ||| || ||||| ||||| || || | || || || | Sbjct 1473734 TTTGGTATTCCCCAACTCTTTTCTCAAAGAAATTAGTCTTCCCTTGCAACGAAATCAACT 1473675 Query 15972 CCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCA--GTTCCGTAAC 16029 |||| ||||||| || || | | | | || || |||||||| ||||| ||| Sbjct 1473674 CCATCCAATCAAATGGGTTTTGAACATTATAGATTTTCTCGTACCCCAATGTTCC--AAC 1473617 Query 16030 TAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAG 16089 || ||||| || |||||||| || ||||||| ||| || || | ||| ||||| | ||| Sbjct 1473616 CAACCTATCCGCCACAAATTCAATGTATTGACTCATCAAATCTCCATTCATTCCAACAAG 1473557 Query 16090 TCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGAT 16149 ||||| | ||| | | |||| ||||| | || || || ||| || Sbjct 1473556 AGCCACCGGCAAAGCATCACAAACGAATTCCCTCTCTATATCCACGGCCTCCGTAACAAT 1473497 Query 16150 ATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAA 16209 | | |||| ||| | | | | | | | | ||| | ||| || || Sbjct 1473496 CTGCCTCACTCGATCCTCACTCAATTTCTTCCTCAACAATGAATACAACAAACAAGCAAA 1473437 Query 16210 GTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCAT 16269 || ||||| || ||||| |||| || | |||||| || || || || || ||||| Sbjct 1473436 ATCACAATGAAGACCTTCATCTCGTGAAATCAATTCGTTTGAGAACGTCAATCCAGGCAT 1473377 Query 16270 TTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAAGAATATACCCT 16328 | || ||||| || |||||||| || | |||| || || || ||||| || |||| Sbjct 1473376 TAACCCACGTTTTTTCAACCAGAAAATAG-AGCAGAAACTACCTGAGAAGAAAATTCCCT 1473318 Query 16329 CAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATT 16388 | || | ||||| || | | || || || | | || || | || |||||| | Sbjct 1473317 CGACGCAAGCAAATGCCAAAATCCGCTCAGCAAATG-AG--TCCGTGCTATCAATCCACT 1473261 Query 16389 TCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACA--- 16445 || |||| ||||| || | || | ||| | || || || || | ||||| Sbjct 1473260 TCAACGCCCAATCGGCCTTCTTCTTCACACATGGGACAGTATCAATAGCATGAAACAGCC 1473201 Query 16446 -ATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCT 16504 ||| ||| | ||| | ||| | ||||| || |||| || | ||| ||||| || Sbjct 1473200 GATT---CTTCTCACTGGA-ATCCTTGATATAAGTTTCAAGGAGAAGACTATACATCTCA 1473145 Query 16505 GAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGT 16564 || || |||||||| || || ||||||||||||||| || || || || | ||| Sbjct 1473144 GAATGAATGTTCTCAATACAAATTTGAAATCCATAGAAGGCTCTGGCTTCAGCGACTTGG 1473085 Query 16565 ACTTC---CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCA 16621 ||||| || | || ||| | || |||||||| |||||||| ||| || || Sbjct 1473084 ACTTCTTTCATG---AACCGTCCGGCAAGGTTCTCCAAAACGATACCATCAGAGGCGGCG 1473028 Query 16622 AAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATG-TAAGAATATGCCAATC 16680 || || || | | || | ||||| | ||| ||||| || | |||| | || ||||| Sbjct 1473027 AAGAAGGCAAGGACGTAAGTGATGAAGTGTTTCTCGTCGGAAGTTAAGGA-ATCCCAATG 1472969 Query 16681 TTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTT 16740 | |||| || | ||| || ||||| | ||||| ||| || | || || || Sbjct 1472968 GCGGAGGTCTTGTGAGAGATCGACCTCTTCGGCGGTCCAGAAGGAGGCTAGGGCTTTCTT 1472909 Query 16741 ATACATTTTCCAAATATCATTGTATTGTA-TGGGAA 16775 ||||| | ||| || | | ||||| | |||||| Sbjct 1472908 GTACATCTCCCAGATTTGAGGATATTGAATTGGGAA 1472873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511213260716480