Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq23 244 1e-59 seq7 95.1 1e-14 >seq23 Length=5684809 Score = 244 bits (270), Expect = 1e-59 Identities = 576/867 (66%), Gaps = 2/867 (0%) Strand=Plus/Minus Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903 ||||||||||| || || | ||| || || |||||||| || |||| || || || Sbjct 1473735 TTTTGGTATTCCCCAACTCTTTTCTCAAAGAAATTAGTCTTCCCTTGCAACGAAATCAAC 1473676 Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATC 23963 ||||| |||| |||| || ||||||||||||| | | | |||||| || | Sbjct 1473675 TCCATCCAATCAAATGGGTTTTGAACATTATAGATTTTCTCGTACCCCAATGTTCCAACC 1473616 Query 23964 AATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 24023 || ||||| || ||||| || || ||| |||||| || | ||||||||| | ||| Sbjct 1473615 AACCTATCCGCCACAAATTCAATGTATTGACTCATCAAATCTCCATTCATTCCAACAAGA 1473556 Query 24024 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 24083 || || | ||| || || ||||| || ||| || || || || | ||| Sbjct 1473555 GCCACCGGCAAAGCATCACAAACGAATTCCCTCTCTATATCCACGGCCTCCGTAACAATC 1473496 Query 24084 GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 24143 || ||| || |||||| | | | || | | ||| |||||| || ||| Sbjct 1473495 TGCCTCACTCGATCCTCACTCAATTTCTTCCTCAACAATGAATACAACAAACAAGCAAAA 1473436 Query 24144 TCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 24203 || || || ||||| || |||| ||| |||||||| || ||||| | ||| |||||| Sbjct 1473435 TCACAATGAAGACCTTCATCTCGTGAAATCAATTCGTTTGAGAACGTCAATCCAGGCATT 1473376 Query 24204 AGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTCCTTC 24262 | ||||| ||||| | ||| || || || ||| | | || || ||||||||||| || Sbjct 1473375 AACCCACGTTTTTTCAACCAGAAAATAGA-GCAGAAACTACCTGAGAAGAAAATTCCCTC 1473317 Query 24263 TACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTATCCACTTTTG 24322 || ||||| || | || | || || | | | || || |||||||| Sbjct 1473316 GACGCAAGCAAATGCCAAAATCCGCTCAGCAAATGAGTCCGTGCTATCAATCCACTTCAA 1473257 Query 24323 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtt 24382 ||||||||||||||||| || ||||| || | || || ||||||| ||| || || Sbjct 1473256 CGCCCAATCGGCCTTCTTCTTCACACATGGGACAGTATCAATAGCATGAAACAGCCGATT 1473197 Query 24383 tttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAAT 24442 || ||| | ||| || | ||| || |||| | |||||||||||| || |||||||| Sbjct 1473196 CTTCTCACTGGAATCCTTGATATAAGTTTCAAGGAGAAGACTATACATCTCAGAATGAAT 1473137 Query 24443 GTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTAT 24502 ||| ||||| ||||||||||| ||||| ||| || || | | || |||||| | Sbjct 1473136 GTTCTCAATACAAATTTGAAATCCATAGAAGGCTCTGGCTTCAGCGACTTGGACTTCTTT 1473077 Query 24503 ACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 24562 || ||| | || | || || || || || ||| ||| || || || || | Sbjct 1473076 CATGAACCGTCCGGCAAGGTTCTCCAAAACGATACCATCAGAGGCGGCGAAGAAGGCAAG 1473017 Query 24563 TACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTT 24622 || | | || || | ||| ||||| | |||| || ||||| || |||| Sbjct 1473016 GACGTAAGTGATGAAGTGTTTCTCGTCGGAAGTTAAGGAATCCCAATGGCGGAGGTCTTG 1472957 Query 24623 AGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCA 24682 || | ||| || ||||| | ||||| || || || || || || ||||| | ||| Sbjct 1472956 TGAGAGATCGACCTCTTCGGCGGTCCAGAAGGAGGCTAGGGCTTTCTTGTACATCTCCCA 1472897 Query 24683 GATGTCATGATATTGAATTGGAAAAAT 24709 ||| | | ||||||||||||| || || Sbjct 1472896 GATTTGAGGATATTGAATTGGGAACAT 1472870 >seq7 Length=7328097 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 |||||| ||||| | |||| ||| || | ||| | || | || ||| || | |||||| Sbjct 6776013 TCCTCCTTGATCAACATATCGAGCAGTATCATTGAATACCCGCAGCATAGGCAAAATACC 6776072 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 ||| |||| ||||| || || ||||| || || ||||||||||||| || || Sbjct 6776073 ATTAGATGTTCCATTTGTTCCACGAATATAACTACCCATGGCACGAATATTGTGGATGGA 6776132 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | ||| || || || || || || | || || |||||| |||||||| || Sbjct 6776133 AACACCAATACCACCAGCGGACTTGCTAATGACAGCACACTCTTTTAAGGTATCATATAT 6776192 Query 54364 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 54405 || ||||||||||| ||| ||||| | || |||||||| Sbjct 6776193 TCCTTCTATACTATCCTCCTTCATGCATACAAGGAAACAGCT 6776234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593488089294720