Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq32 109 5e-19 seq1 91.5 1e-13 seq78 87.8 2e-12 >seq32 Length=4239389 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||||||| | ||||| | || |||||||| || ||| ||| |||| | | Sbjct 977514 ATGCAAATATTCGTAAAAACTCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGCTCT 977455 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || ||||| ||| ||| |||||||| || | || || ||| Sbjct 977454 GATACAATTGACAATGTTAAGGCAAAGATTCAAGATAAAGAGGGCATTCCACCCGACCAA 977395 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||||||||| || || ||||| || || | ||| | |||||||||||| Sbjct 977394 CAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGACGGCCGAACGCTTGCCGATTACAAT 977335 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 || || ||||||||||| || || ||||| | || | || || ||| Sbjct 977334 ATCCAAAAGGAATCTACACTCCATTTGGTGCTTAGACTTCGCGGTGGG 977287 >seq1 Length=8341428 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| |||||| | ||| ||| || |||||||||||||| || || || || |||| Sbjct 3817521 GATAAGGAAGGTATTCCCCCAGACCAGCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAG 3817462 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 ||| |||| | || |||||||| || |||||||||||||||||||| Sbjct 3817461 GATGGACGAACTCTTGCTGATTACAACATCCAGAAGGAATCTACTCTTCA 3817412 >seq78 Length=1515738 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | ||||| || ||||| ||||| || || ||| || | Sbjct 1185108 AATGCAAATTTTTGTGAAAACTTTAACGGG-AAAACAATCACTTTGGAAGTTGAGAGTTC 1185050 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | || ||||| || ||| ||||||||||| | || ||| || Sbjct 1185049 AGATACAATTGATAATGTTAAGGCTAAGATTCAAGATAAAGAAGGGATCCCACCAGACCA 1184990 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| ||| | || || || || || ||| |||||||| | ||| | ||||| || || Sbjct 1184989 ACAGAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGTAGGACTCTAGCCGACTATAA 1184930 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| |||||||| ||||| ||| ||||||| || | || ||||| Sbjct 1184929 CATTCAAAAGGAATCAACTCTCCACTTGGTGTTGCGTCTTCGTGGAGG 1184882 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| | ||||| | || || |||||||| ||| || |||| | | Sbjct 1185564 AATGCAAATCTTCGTGAAAACCCTCACTGGTAAAACCATCACCTTAGAGGTGGAAAGCTC 1185505 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | ||| || || |||||||| ||| | ||| || || Sbjct 1185504 TGATACCATCGATAATGTGAAGGCTAAGATCCAAGATAAAGAGGGTATTCCCCCTGACCA 1185445 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| || || || || || || |||||||| |||||| | ||| |||| || ||||| Sbjct 1185444 ACAGAGGCTAATTTTCGCTGGTAAACAACTTGAAGATGGCCGGACTTTGGCGGACTACAA 1185385 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTG 29171 |||||| |||||||| ||| | || ||||| Sbjct 1185384 TATTCAAAAGGAATCCACTTTGCATTTGGTG 1185354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428171747064920