Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq32 105 5e-18 seq78 93.3 3e-14 seq1 91.5 1e-13 >seq32 Length=4239389 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||||||| | ||||| | || |||||||| || ||| ||| |||| | | Sbjct 977514 ATGCAAATATTCGTAAAAACTCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGCTCT 977455 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || | ||| ||| ||| |||||||| || | || || ||| Sbjct 977454 GATACAATTGACAATGTTAAGGCAAAGATTCAAGATAAAGAGGGCATTCCACCCGACCAA 977395 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || ||||||||||| || || ||| | || || | ||| | |||||||||||| Sbjct 977394 CAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGACGGCCGAACGCTTGCCGATTACAAT 977335 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 || |||||||||||||| || || ||||| | || | || || ||| Sbjct 977334 ATCCAAAAGGAATCTACACTCCATTTGGTGCTTAGACTTCGCGGTGGG 977287 >seq78 Length=1515738 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||||||||| | || ||| ||||| ||| | || || || || || ||||||||| Sbjct 1185015 GATAAAGAAGGGATCCCACCAGACCAACAGAGATTGATTTTCGCTGGTAAGCAATTGGAA 1184956 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| | ||| | ||||| || || |||||||||||||| ||||| ||| ||||||| Sbjct 1184955 GATGGTAGGACTCTAGCCGACTATAACATTCAAAAGGAATCAACTCTCCACTTGGTGTTG 1184896 Query 25248 CGATTACGAGGAGG 25261 || | || ||||| Sbjct 1184895 CGTCTTCGTGGAGG 1184882 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| | ||||| | || || |||||||| ||| || |||| | | Sbjct 1185564 AATGCAAATCTTCGTGAAAACCCTCACTGGTAAAACCATCACCTTAGAGGTGGAAAGCTC 1185505 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | ||| || || |||||||| ||| | ||| || || Sbjct 1185504 TGATACCATCGATAATGTGAAGGCTAAGATCCAAGATAAAGAGGGTATTCCCCCTGACCA 1185445 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| || || || || || || |||||| | |||||| | ||| |||| || ||||| Sbjct 1185444 ACAGAGGCTAATTTTCGCTGGTAAACAACTTGAAGATGGCCGGACTTTGGCGGACTACAA 1185385 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTG 25244 ||||||||||||||| ||| | || ||||| Sbjct 1185384 TATTCAAAAGGAATCCACTTTGCATTTGGTG 1185354 >seq1 Length=8341428 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| |||||| | ||| ||| || |||||||||||||| || || || || ||||| Sbjct 3817521 GATAAGGAAGGTATTCCCCCAGACCAGCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAG 3817462 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237 ||| |||| | || |||||||| || || ||||||||||||||||| Sbjct 3817461 GATGGACGAACTCTTGCTGATTACAACATCCAGAAGGAATCTACTCTTCA 3817412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410639272778096