Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq16 116 4e-21 seq1 116 4e-21 seq32 109 6e-19 seq11182 100 3e-16 seq78 95.1 1e-14 >seq16 Length=5655878 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || ||||| || |||||||| |||| || || | || Sbjct 2199162 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATCACTCTCGAAGTTGAGAGCTCC 2199221 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||||| ||| || | ||||| || || |||||| |||||||| Sbjct 2199222 GATACCATCGACAATGTCAAGGCAAAGATCCAGGACAAGGAAGGAATCCCCCCGGACCAG 2199281 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | || | ||| || || ||||| || |||| || || || |||||||||| Sbjct 2199282 CAGCGTTTGATTTTCGCCGGAAAGCAGCTCGAGGACGGCCGAACTCTAGCCGACTACAAC 2199341 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 || |||||||| | || || || || ||| | || | || || |||| Sbjct 2199342 ATTCAGAAGGAATCGACCCTCCACCTTGTGCTTCGTCTCAGAGGAGGCG 2199390 >seq1 Length=8341428 Score = 116 bits (128), Expect = 4e-21 Identities = 161/219 (74%), Gaps = 5/219 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTC-GT-AAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA 40747 |||||||| || || |||||| ||||| || || ||||||||| | || || || | Sbjct 3817174 ATGCAAATTTTTTGTCAAAAACTCTCACCGGGAAGACCATCACCTTGGAGGTTGAGTCTT 3817115 Query 40748 CCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCAT-CCCCGCGGA 40805 | |||| | | |||| | |||| || |||| ||||| || ||||| |||| | || Sbjct 3817114 CTGACACAATTGACAACG-TGAAGGCTAAGATTCAGGACAAGGAAGGCATTCCCCCCAGA 3817056 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| |||| |||| ||| || |||||| |||| || | || || || || || Sbjct 3817055 CCAGCAGAGACTTATCTTCGCTGGGAAACAGTTGGAAGATGGCCGAACTCTTGCAGATTA 3816996 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||||||| | || || ||||| |||||||| Sbjct 3816995 CAACATCCAGAAGGAGTCGACCCTCCATCTTGTGTTGCG 3816957 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| ||||||||| | || || || | || Sbjct 3818070 ATGCAAATCTTCGTTAAGACCCTTACAGGCAAGACCATCACCCTTGAGGTGGAGTCTTCC 3818011 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| ||||| | || || || || || ||| |||| || Sbjct 3818010 GACACCATCGACAACG-TCAAGGCCAAAATCCAGGATAAGGAAGGGATTCCCCCGGATCA 3817952 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||||| | |||| ||| ||||| || || || || | || || || ||||||||| Sbjct 3817951 GCAACGATTGATCTTCGCCGGCAAGCAACTTGAGGATGGCCGAACTCTTGCCGACTACAA 3817892 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||| ||| | || || || || || Sbjct 3817891 CATTCAGAAAGAGTCAACTCTTCACCTTGT 3817862 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| |||||||| || || | || || || || || ||| |||| ||||| | || Sbjct 3816943 ATGCAGATATTCGTCAAGACTTTGACTGGGAAGACAATTACCCTCGAGGTCGAGAGCTCC 3816884 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | |||| |||||||| || || || ||||| ||| | ||||| Sbjct 3816883 GATACCATTGACAACGTT-AAGGCAAAAATTCAAGATAAGGAAGGCATTCCCCCAGACCA 3816825 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| ||| || || |||||||| || | | || || |||||||| Sbjct 3816824 GCAGAGGTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGAAGGACTCTTGCTGACTACAA 3816765 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| || |||||| |||| || || || || | || ||||||| || Sbjct 3816764 CATTCAAAAGGAGTCCACCCTTCACCTTGTTCTCCGTCTGAGGGGAGG 3816717 Score = 102 bits (112), Expect = 8e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || || || || || |||||| |||| || || || || Sbjct 3817614 ATGCAAATTTTTGTCAAGACTCTTACCGGAAAGACTATCACCCTCGAGGTGGAGTCCTCC 3817555 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| |||||| || || | || || || || || ||| | ||||| Sbjct 3817554 GATACCATTGATAACG-TCAAGGCCAAGATCCAGGATAAGGAAGGTATTCCCCCAGACCA 3817496 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| |||| |||| ||| || || ||| |||| || | || || || || ||||| Sbjct 3817495 GCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAGGATGGACGAACTCTTGCTGATTACAA 3817436 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || ||||| || Sbjct 3817435 CATCCAGAAGGAATCTACTCTTCATCTTGT 3817406 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || |||||||| || || || || || |||||| | || || || | || Sbjct 3817842 ATGCAGATCTTTGTAAAAACACTTACCGGAAAGACGATCACCCTTGAGGTGGAGTCTTCC 3817783 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| || | ||| || || || || || ||| ||||||| Sbjct 3817782 GACACTATTGACAACGTTAAAGCCAAGA-TTCAGGATAAGGAAGGAATTCCCCCGGACCA 3817724 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||||| ||| || || || || || |||| || ||||| ||| ||||| Sbjct 3817723 GCAACGTCTCATCTTCGCTGGAAAGCAACTTGAGGACGGCCGAACCCTTGCCGATTACAA 3817664 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 || |||||||| | || || || || ||| Sbjct 3817663 TATACAGAAGGAATCTACTCTCCACCTCGTG 3817633 >seq32 Length=4239389 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||||||||||||||| ||||| |||||||| |||||| |||| || ||| | | Sbjct 977514 ATGCAAATATTCGTAAAAACTCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGCTCT 977455 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| ||| |||| || ||||||||||| || | ||||| Sbjct 977454 GATACAATTGACAATGTTAAGGCAAAGATTCAAGATAAAGAGGGCATTCCACCCGACCAA 977395 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || || || || || || |||| || || || ||| ||||| Sbjct 977394 CAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGACGGCCGAACGCTTGCCGATTACAAT 977335 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||| ||||| | || || ||| | ||| Sbjct 977334 ATCCAAAAGGAATCTACACTCCATTTGGTG 977305 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||||||||| || || || || || |||||||||||||| | || || || | Sbjct 977286 ATGCAAATATTTGTGAAGACCCTTACTGGCAAAACCATCACTCTTGAGGTGGAGAGTTCT 977227 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||||| ||||| | ||||| || || || || | ||||| Sbjct 977226 GATACCATTGACAATGTCAAGGCTAAAATACAAGACAAGGAAGGTATTCCACCTGACCAA 977167 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||| || | || || || ||||| || |||| ||| || ||| |||||||| Sbjct 977166 CAGAGACTTATTTTTGCTGGTAAGCAGCTCGAGGACGGGCGGACTCTCGCTGACTACAAT 977107 Query 40870 ATCCAGAAGGAGGCCACGCTGCAT 40893 || |||||||| | || |||||| Sbjct 977106 ATTCAGAAGGAATCTACTCTGCAT 977083 >seq11182 Length=218 Score = 100 bits (110), Expect = 3e-16 Identities = 112/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || ||||| |||||||||||| |||| |||||| || | Sbjct 69 ATGCAAATTTTCGTTAAGACCCTGACGGGTAAAACCATCACCCTCGAGGTCGAATCCTCT 128 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| |||||| ||| || | ||||| ||||| || ||| | ||||| Sbjct 129 GATACCATCGATAACG-TCAAGGCAAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCA 187 Query 40809 GCAACGACTCATCTACGCGGGCAAACA 40835 ||| ||||||||| || || || || Sbjct 188 ACAAAGACTCATCTTTGCTGGTAAGCA 214 >seq78 Length=1515738 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||||||||| || || || | || || || || ||||| | || || || | | Sbjct 1184881 AATGCAAATATTTGTGAAGACCTTGACAGGAAAGACAATCACATTGGAGGTTGAGAGCTC 1184822 Query 40749 CGACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | || |||| | |||| ||||| | ||||| ||||| ||||| | |||| Sbjct 1184821 AGACACCATTGATAACG-TTAAGGCTAAAATCCAGGACAAGGAGGGTATCCCTCCTGACC 1184763 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||||| ||||||| | ||| || ||||| |||| || | || || | ||| |||| Sbjct 1184762 AGCAAAGACTCATTTTCGCTGGAAAACAATTGGAGGATGGACGTACATTGGCCGATTACA 1184703 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||| || |||||| |||| || || || || Sbjct 1184702 ACATTCAAAAGGAGTCCACCCTCCACCTTGT 1184672 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| ||||| ||||| || |||||||||||| | || || ||| | | Sbjct 1185564 AATGCAAATCTTCGTGAAAACCCTCACTGGTAAAACCATCACCTTAGAGGTGGAAAGCTC 1185505 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | | | |||| || || | || |||||||| || ||| | ||||| Sbjct 1185504 TGATACCATCGATAATGTGAAGGCTAAGATCCAAGATAAAGAGGGTATTCCCCCTGACCA 1185445 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || | || || | ||| || ||||| || || || | || || | |||||||| Sbjct 1185444 ACAGAGGCTAATTTTCGCTGGTAAACAACTTGAAGATGGCCGGACTTTGGCGGACTACAA 1185385 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 || || ||||| |||| ||||| | ||| Sbjct 1185384 TATTCAAAAGGAATCCACTTTGCATTTGGTG 1185354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515016564288640