Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq78 154 2e-32 seq32 141 1e-28 >seq78 Length=1515738 Score = 154 bits (170), Expect = 2e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || || || || ||||| ||||| | ||| ||||| | Sbjct 1185791 ATGCAAATCTTTGTGAAAACTCTCACCGGAAAAACAATAACCCTTGAGGTTGAAAGTTCT 1185732 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| |||| |||||||||||||| ||||| || || || || || Sbjct 1185731 GACACTATCGACAATGTAAAGGCCAAAATTCAAGATAAGGAAGGAATCCCTCCAGACCAG 1185672 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||||||||||| || ||||| ||| | |||||| ||||||| | | ||||| || Sbjct 1185671 CAAAGGCTTATTTTCGCTGGAAAGCAACTTGAGGATGGTCGAACCCTCGCTGATTACAAC 1185612 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || |||||||||||||| | || |||||| | |||||||| ||||| || Sbjct 1185611 ATACAAAAAGAATCAACCCTTCACTTGGTTCTCCGTTTACGTGGTGGAAT 1185562 Score = 138 bits (152), Expect = 2e-27 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | || || || || || ||||| || || ||||| | ||| Sbjct 1185564 AATGCAAATCTTCGTGAAAACCCTCACTGGTAAAACCATCACCTTAGAGGTGGAAAGCTC 1185505 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| || |||| | || || || ||||||||||| ||||| || ||||| || Sbjct 1185504 TGATACCATCGATAATGTGAAGGCTAAGATCCAAGATAAAGAGGGTATTCCCCCTGACCA 1185445 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| ||||| ||||| || || |||||| | || ||| | || || || | || || || Sbjct 1185444 ACAGAGGCTAATTTTCGCTGGTAAACAACTTGAAGATGGCCGGACTTTGGCGGACTACAA 1185385 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||||||| ||||| |||||||||||||| | ||| | || ||||| || ||| || Sbjct 1185384 TATTCAAAAGGAATCCACTTTGCATTTGGTGCTTCGTCTTCGTGGTGGAATGCAAATTT 1185326 Score = 129 bits (142), Expect = 9e-25 Identities = 170/232 (73%), Gaps = 3/232 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||| ||| | || || |||| || ||||| || ||| | || |||| || Sbjct 1185108 AATGCAAATTTTTGTGAAAACTTTAACGGG-AAAACAATCACTTTGGAAGTTGAGAGTTC 1185050 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 | ||||||||| |||| | || || ||||||||||||||||| || ||||| || | Sbjct 1185049 A-GATACAATTGATAATGTTAAGGCTAAGATTCAAGATAAAGAAGGGATCCCACCAGACC 1184991 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 |||| || | ||||| || || || ||||| || ||| || | || ||| || |||| Sbjct 1184990 AACAGAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGTAGGACTCTAGCCGACTATA 1184931 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | |||||||| ||||||||| | || ||||| || ||| | || || || || Sbjct 1184930 ACATTCAAAAGGAATCAACTCTCCACTTGGTGTTGCGTCTTCGTGGAGGAAT 1184879 Score = 120 bits (132), Expect = 5e-22 Identities = 168/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||||||| | ||||| | ||||| || || || || | ||| |||| ||| Sbjct 1184881 AATGCAAATATTTGTGAAGACCTTGACAGGAAAGACAATCACATTGGAGGTTGAGAGCTC 1184822 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 | || || ||| ||| | || ||||| || || || || ||||| || ||||| | Sbjct 1184821 A-GACACCATTGATAACGTTAAGGCTAAAATCCAGGACAAGGAGGGTATCCCTCCTGACC 1184763 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | ||||| || ||||| || ||||||||||| |||||| | || ||||| | ||||| | Sbjct 1184762 AGCAAAGACTCATTTTCGCTGGAAAACAATTGGAGGATGGACGTACATTGGCCGATTACA 1184703 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATT 124769 | |||||||| || || || | || | || | ||| | || ||||||||| Sbjct 1184702 ACATTCAAAAGGAGTCCACCCTCCACCTTGTCCTTCGTCTTCGTGGTGGTATT 1184650 >seq32 Length=4239389 Score = 141 bits (156), Expect = 1e-28 Identities = 174/238 (73%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | ||||| || || |||||||| || ||| | ||| | || | Sbjct 977286 ATGCAAATATTTGTGAAGACCCTTACTGGCAAAACCATCACTCTTGAGGTGGAGAGTTCT 977227 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | || ||||| ||||| || |||||||| |||||||| ||| Sbjct 977226 GATACCATTGACAATGTCAAGGCTAAAATACAAGACAAGGAAGGTATTCCACCTGACCAA 977167 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || ||||||||||| || || || | ||||| | || || | | || || ||| Sbjct 977166 CAGAGACTTATTTTTGCTGGTAAGCAGCTCGAGGACGGGCGGACTCTCGCTGACTACAAT 977107 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||| || ||||| ||| ||||||||||| | ||| | || || ||||| ||| || Sbjct 977106 ATTCAGAAGGAATCTACTCTGCATTTGGTTCTTCGTCTTCGTGGGGGTATGCAAATTT 977049 Score = 132 bits (146), Expect = 7e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||||||||| |||| || || || |||||||| || || | ||| | ||| | Sbjct 977514 ATGCAAATATTCGTAAAAACTCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGCTCT 977455 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| |||| || || |||||||||||||| || || ||||| || || Sbjct 977454 GATACAATTGACAATGTTAAGGCA-AAGATTCAAGATAAAGAGGGCATTCCACCCGACCA 977396 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| |||||||| ||||| || || ||| | ||||| | ||||| | | ||||| || Sbjct 977395 ACAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGACGGCCGAACGCTTGCCGATTACAA 977336 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747 ||| ||||| ||||| || | |||||||| Sbjct 977335 TATCCAAAAGGAATCTACACTCCATTTGGT 977306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755158879155200