Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq32 131 1e-25 seq1 122 8e-23 seq78 120 3e-22 seq16 107 2e-18 >seq32 Length=4239389 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | ||| | |||||| |||| |||||| || ||||| || ||||||||| Sbjct 977288 CCACCGCGAAGTCTAAGCACCAAATGGAGTGTAGATTCCTTTTGGATATTGTAATCGGCA 977347 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || ||||| || || || ||||| |||| || | ||| || ||||| || Sbjct 977348 AGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGA 977407 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||| || ||| ||| ||| ||||| | || | || || | ||| || ||| Sbjct 977408 ATGCCCTCTTTATCTTGAATCTTTGCCTTAACATTGTCAATTGTATCAGAGCTTTCCACC 977467 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| ||| | |||||||| || ||||||||||| || || ||||| Sbjct 977468 TCGAGGGTGATTGTTTTGCCAGTGAGAGTTTTTACGAATATTTGCAT 977514 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || |||||||| || || |||||||| || || || |||||| | || Sbjct 976627 GTGGAGGGTGGACTCTTTCTGGATATTGTAATCAGCCAATGTCCGACCATCCTCCAATTG 976686 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 |||||||| |||| || | ||| ||||| ||||| || ||||| |||||| ||| || Sbjct 976687 CTTTCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGAATCCCCTCTTTGTCTTGAATCTT 976746 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| |||||| | || ||||| || | || | || || || || Sbjct 976747 CGCCTTCACATTGTCGATGGTGTCTGAACTTTCGACTTCCAATGTGATTGTCTTCCCTGT 976806 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 | || || || ||||||||||| Sbjct 976807 TAACGTCTTCACGAAAATCTGCAT 976830 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-GCT 118570 || ||||| |||| | ||| || || | || || || ||||||||||| ||||| ||| Sbjct 976832 CCACCGCGCAATCGGAGCACTAAATGCAACGTTGATTCCTTTTGAATGTTATAATCTGCT 976891 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||| | ||| || ||||| || ||||| | || | | ||| || || || || Sbjct 976892 -AGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCCGGTGG 976950 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || |||||||| ||| || || ||| || | || | || || | |||||| || Sbjct 976951 AATACCCTCCTTATCTTGGATCTTAGCTTTCACATTATCAATTGTATCAGAGCTCTCCAC 977010 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | ||||| || |||| ||||| |||||||| ||||| Sbjct 977011 TTCCAAGGTAATTGTTTTCCCAGTCAAGGTTTTCACAAAAATTTGCAT 977058 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | ||||| || || ||||| ||||| || | ||| ||| |||||| Sbjct 977078 ACCAAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCAGCGAGAGTCCGCCCGTCCTCG 977137 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| | || || | ||| || || || || || || ||||||||| Sbjct 977138 AGCTGCTTACCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGT 977197 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| || || | || | ||| || | ||||| ||||| | || | |||||| Sbjct 977198 ATTTTAGCCTTGACATTGTCAATGGTATCAGAACTCTCCACCTCAAGAGTGATGGTTTTG 977257 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || ||||| || ||||| Sbjct 977258 CCAGTAAGGGTCTTCACAAATATTTGCAT 977286 >seq1 Length=8341428 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| |||||||||||||| || | ||| | |||||| ||||| ||||| Sbjct 3816747 GTGGACTCCTTTTGAATGTTGTAGTCAGCAAGAGTCCTTCCATCCTCCAGCTGCTTTCCG 3816806 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | | |||||| || || || ||||| ||||| ||| ||||||| ||| Sbjct 3816807 GCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCTTGAATTTTTGCCTTA 3816866 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||| || | |||||||||||||| ||| | || || || |||| ||| Sbjct 3816867 ACGTTGTCAATGGTATCGGAGCTCTCGACCTCGAGGGTAATTGTCTTCCCAGTCAAAGTC 3816926 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 3816927 TTGACGAATATCTGCAT 3816943 Score = 114 bits (126), Expect = 1e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| ||||| || || || || ||||||||| | || || ||||| Sbjct 3817633 CACGAGGTGGAGAGTAGATTCCTTCTGTATATTGTAATCGGCAAGGGTTCGGCCGTCCTC 3817692 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 || || ||||||||| |||||||||| ||||| || || || || || ||||| || Sbjct 3817693 AAGTTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTATCCTG 3817752 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || |||||| | || | ||||| | ||| ||||| | ||| | ||| || Sbjct 3817753 AATCTTGGCTTTAACGTTGTCAATAGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTT 3817812 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| || ||||||||||| ||||||||| Sbjct 3817813 TCCGGTAAGTGTTTTTACAAAGATCTGCATG 3817843 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/232 (70%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | |||||| | |||| || ||||| || || ||||||||||| Sbjct 3816943 TACCACCACGGAGACGCAACACAAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCTG 3817002 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATC-GGGA 118628 | ||| || ||| || | |||||| |||||| |||| || | |||||| || ||| Sbjct 3817003 CAAGAGTTCGGCCATCTTCCAACTGTTTCCCAGCGAAGATAAGTCTCTGCTGGTCTGGGG 3817062 Query 118629 GGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCG 118688 || ||||| |||||||| ||| || || || | || | ||||| | ||| Sbjct 3817063 GGAATGCCTTCCTTGTCCTGAATCTTAGCCTTCACGTTGTCAATTGTGTCAGAAGACTCA 3817122 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTT-AC-AAAAATCTGCAT 118738 ||||| | ||| | || || ||||| ||||||||| || |||||| ||||| Sbjct 3817123 ACCTCCAAGGTGATGGTCTTCCCGGTGAGAGTTTTTGACAAAAAATTTGCAT 3817174 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| || || || ||||||||||| | ||| || |||||| | ||| ||||| Sbjct 3817418 GTAGATTCCTTCTGGATGTTGTAATCAGCAAGAGTTCGTCCATCCTCCAACTGCTTTCCG 3817477 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| || | ||||| || || || || || ||||| || || || || Sbjct 3817478 GCGAAGATAAGTCTTTGCTGGTCTGGGGGAATACCTTCCTTATCCTGGATCTTGGCCTTG 3817537 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||| || | | ||| ||||||| ||| | || || ||||| ||||| Sbjct 3817538 ACGTTATCAATGGTATCGGAGGACTCCACCTCGAGGGTGATAGTCTTTCCGGTAAGAGTC 3817597 Query 118722 TTTACAAAAATCTGCATG 118739 || |||||||| |||||| Sbjct 3817598 TTGACAAAAATTTGCATG 3817615 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||| ||||||||||| ||| | ||| || |||||| || || || || Sbjct 3817874 GTTGACTCTTTCTGAATGTTGTAGTCGGCAAGAGTTCGGCCATCCTCAAGTTGCTTGCCG 3817933 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | || |||||||| || || || || ||||| || ||||| || Sbjct 3817934 GCGAAGATCAATCGTTGCTGATCCGGGGGAATCCCTTCCTTATCCTGGATTTTGGCCTTG 3817993 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||| | ||| ||||| | ||| | || ||||| || || || Sbjct 3817994 ACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTGCCTGTAAGGGTC 3818053 Query 118722 TTTACAAAAATCTGCAT 118738 || || || || ||||| Sbjct 3818054 TTAACGAAGATTTGCAT 3818070 >seq78 Length=1515738 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| |||||||||||||||||| || || || |||||| | || Sbjct 1184677 GTGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAATGTACGTCCATCCTCCAATTG 1184736 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 |||||||||| | ||||| | ||||| || ||||| || ||||||||||| ||||| Sbjct 1184737 TTTTCCAGCGAAAATGAGTCTTTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATTTT 1184796 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 ||||| | || | |||||| | |||||| ||||| | || | || || || || Sbjct 1184797 AGCCTTAACGTTATCAATGGTGTCTGAGCTCTCAACCTCCAATGTGATTGTCTTTCCTGT 1184856 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| || ||||| Sbjct 1184857 CAAGGTCTTCACAAATATTTGCAT 1184880 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || ||||| | | |||||||| | || || |||||||| ||||||||||| Sbjct 1185565 CCACCACGTAAACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGTATGTTGTAATCAGCG 1185624 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || |||||| || || ||||||||| | || || | ||||| || ||||| Sbjct 1185625 AGGGTTCGACCATCCTCAAGTTGCTTTCCAGCGAAAATAAGCCTTTGCTGGTCTGGAGGG 1185684 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || ||||| ||| |||||| || || | |||| ||||| | || || ||| Sbjct 1185685 ATTCCTTCCTTATCTTGAATTTTGGCCTTTACATTGTCGATAGTGTCAGAACTTTCAACC 1185744 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | ||||| ||||| |||||||| ||||| || ||||| Sbjct 1185745 TCAAGGGTTATTGTTTTTCCGGTGAGAGTTTTCACAAAGATTTGCAT 1185791 Score = 102 bits (112), Expect = 7e-17 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCC 118586 ||| | ||| | || || || |||||||||||||||||| ||||| ||| ||| Sbjct 1185126 CACAAGGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCG--GCTAGTGTCCGTCCATCT 1185183 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 |||||||| || || || |||| | | |||||| || || || | |||||||||||| Sbjct 1185184 TCGAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCCGGGGGAACTCCCTCCTTGTCT 1185243 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 ||| || ||| || | |||| ||||| | ||| || ||||| | || | ||| Sbjct 1185244 TGAATCTTAGCTTTGACATTATCGATTGTGTCAGAGCTTTCAACCTCTAATGTAATAGTT 1185303 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || ||||| || ||||| ||||| Sbjct 1185304 TTCCCCGTAAGTGTTTTGACGAAAATTTGCAT 1185335 >seq16 Length=5655878 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| || || || || ||||||||||| ||| | ||| || ||||| Sbjct 2199371 CACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAGTCGGCTAGAGTTCGGCCGTCCTC 2199312 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| ||||| ||| | || | ||||||||| || || || || || |||||||| Sbjct 2199311 GAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCCGGGGGGATTCCTTCCTTGTCCTG 2199252 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || ||| || || | |||| ||| || | |||||| || |||| || | || || Sbjct 2199251 GATCTTTGCCTTGACATTGTCGATGGTATCGGAGCTCTCAACTTCGAGAGTGATGGTCTT 2199192 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 || || || ||||| || || |||||||||| Sbjct 2199191 ACCCGTTAGGGTTTTCACGAAGATCTGCATGG 2199160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433664040141088