Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq78 107 3e-18 seq32 100 4e-16 seq39 98.7 1e-15 seq1 86.0 9e-12 >seq78 Length=1515738 Score = 107 bits (118), Expect = 3e-18 Identities = 160/231 (69%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 |||| || | ||| | || ||||| || | ||| ||||| ||| || || ||||| || Sbjct 1184880 TTCCTCCACGAAGACGCAACACCAAGTGGAGAGTTGATTCCTTTTGA-ATGTTATAGTCG 1184938 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||||| || | ||| || ||||| || ||||| ||||||||||| || || || || Sbjct 1184939 GCTAGAGTCCTACCATCTTCCAATTGCTTACCAGCGAAAATCAATCTCTGTTGGTCTGGT 1184998 Query 146168 GGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCT 146227 || || |||||||||||||| ||||||||||| || Sbjct 1184999 GGGATCCCTTCTTTATCTTGAATCTTAGCCTTAACATTATCAATTGTATCTGAACTCTCA 1185058 Query 146228 ACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 ||||| | ||||||||||| || ||||| ||||| | || ||||||||| Sbjct 1185059 ACTTCCAAAGTGATTGTTTT-CCCGTTAAAGTTTTCACAAAAATTTGCATT 1185108 Score = 93.3 bits (102), Expect = 6e-14 Identities = 156/231 (68%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 ||||||| | ||| | | |||||||| ||||| ||||| ||| || ||||| || || Sbjct 1185335 TTCCACCACGAAGACGAAGCACCAAATGCAAAGTGGATTCCTTTTGA-ATATTGTAGTCC 1185393 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | | ||| | || ||| || | |||||| ||||| ||||| | || || || || || Sbjct 1185394 GCCAAAGTCCGGCCATCTTCAAGTTGTTTACCAGCGAAAATTAGCCTCTGTTGGTCAGGG 1185453 Query 146168 GGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCT 146227 ||||| || ||||||||||| ||||| || ||||| Sbjct 1185454 GGAATACCCTCTTTATCTTGGATCTTAGCCTTCACATTATCGATGGTATCAGAGCTTTCC 1185513 Query 146228 ACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 || |||| ||||| |||||||| || | ||||| | ||| ||||||||| Sbjct 1185514 ACCTCTAAGGTGATGGTTTTACCAGTGAGGGTTTTCACGAAGATTTGCATT 1185564 >seq32 Length=4239389 Score = 100 bits (110), Expect = 4e-16 Identities = 160/238 (67%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||||| | |||||||| | |||||||| || ||||| ||||| | | Sbjct 977288 CCACCGCGAAGTCTAAGCACCAAATGGAGTGTAGATTCCTTTTGGATATTGTAATCGGCA 977347 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || |||| || || || | ||| || |||||||| || | || || || || || ||| Sbjct 977348 AGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGA 977407 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || || ||||||||||| ||||| || ||||| || Sbjct 977408 ATGCCCTCTTTATCTTGAATCTTTGCCTTAACATTGTCAATTGTATCAGAGCTTTCCACC 977467 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTTATTAGAAA 146288 || || ||||||||||| || || | ||||| | |||||||||||| | | ||||| Sbjct 977468 TCGAGGGTGATTGTTTTGCCAGTGAGAGTTTTTACGAATATTTGCATCTGTTAAGAAA 977525 Score = 93.3 bits (102), Expect = 6e-14 Identities = 94/120 (78%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 || ||||| || || ||||| ||| || || |||||||||| ||||| |||| ||| || Sbjct 976850 ACTAAATGCAACGTTGATTCCTTTTGA-ATGTTATAATCTGCTAGAGTCCTGCCATCTTC 976908 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | || || |||||||||||||| || || || ||||| ||||| || || |||||||| Sbjct 976909 AAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCCGGTGGAATACCCTCCTTATCTTG 976968 >seq39 Length=3648736 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATC 146106 || || || ||||| || || ||||| || | || || || ||| || || |||||||| Sbjct 1061500 GTACCTCCCCTAAGCCTCAAAACCAAGTGAAGGGTTGACTCCTTTTGA-ATGTTATAATC 1061558 Query 146107 TGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGG 146166 || ||| |||| | ||| || ||||| || ||||||||||| ||||| ||||| || || Sbjct 1061559 TGCAAGCGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGTCAGG 1061618 Query 146167 AGGAATTCCTTCTTTATCTTG 146187 |||||| ||||| || || || Sbjct 1061619 AGGAATACCTTCCTTGTCCTG 1061639 >seq1 Length=8341428 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| |||| || | || | ||| || ||||| || || || || | | Sbjct 3817844 CCACCACGAAGCCTTAGGACAAGGTGAAGAGTTGACTCTTTCTGAATGTTGTAGTCGGCA 3817903 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||||| || ||| || | ||| || || || || ||||||| |||||||||||| ||| Sbjct 3817904 AGAGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAGATCAATCGTTGCTGATCCGGGGGA 3817963 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| ||||| || Sbjct 3817964 ATCCCTTCCTTATCCTG 3817980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743233971066880