Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq16 107 1e-18 seq1 102 5e-17 seq32 96.9 2e-15 seq78 82.4 5e-11 >seq16 Length=5655878 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| ||||| | || ||| ||||| ||||||||||||| || ||| |||| Sbjct 2199373 AGCACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAGTCGGCTAGAGTTCGGCCGTCC 2199314 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || |||||||| | ||||||||||| ||| | | |||||||| Sbjct 2199313 TCGAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCCGGGGGGATTCCTTCCTTGTCC 2199254 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 |||||| ||| | || | | || | ||||| || || || | |||||||| Sbjct 2199253 TGGATCTTTGCCTTGACATTGTCGATGGTATCGGAGCTCTCAACTTCGAGAGTGATGGTC 2199194 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || || |||||||| ||||||||||| Sbjct 2199193 TTACCCGTTAGGGTTTTCACGAAGATCTGCAT 2199162 >seq1 Length=8341428 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || |||| ||||| ||||| | |||| ||| |||||||| ||||| |||| Sbjct 3817616 CCACCACGGAGCCGGAGCACGAGGTGGAGAGTAGATTCCTTCTGTATATTGTAATCGGCA 3817675 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||| || ||||| ||||| || |||||||| ||| Sbjct 3817676 AGGGTTCGGCCGTCCTCAAGTTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCCGGGGGA 3817735 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGA-TCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||| || ||||| |||||| | | | || | |||| || || || Sbjct 3817736 ATTCCTTCCTTATCCTGAATCTTG-GCTTTAACGTTGTCAATAGTGTCGGAAGACTCCAC 3817794 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || || ||||| || ||||| |||||||||||||| Sbjct 3817795 CTCAAGGGTGATCGTCTTTCCGGTAAGTGTTTTTACAAAGATCTGCAT 3817842 >seq32 Length=4239389 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || || ||||||| || | ||| ||| || || || ||||| |||| Sbjct 977288 CCACCGCGAAGTCTAAGCACCAAATGGAGTGTAGATTCCTTTTGGATATTGTAATCGGCA 977347 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| |||| || | ||||| || || || || |||| ||| |||||| || Sbjct 977348 AGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGA 977407 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||| || || |||||| ||| | || | | || | ||| | ||| || Sbjct 977408 ATGCCCTCTTTATCTTGAATCTTTGCCTTAACATTGTCAATTGTATCAGAGCTTTCCACC 977467 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||| |||||||| ||||||||||| || || || |||||| Sbjct 977468 TCGAGGGTGATTGTTTTGCCAGTGAGAGTTTTTACGAATATTTGCATC 977515 >seq78 Length=1515738 Score = 82.4 bits (90), Expect = 5e-11 Identities = 163/234 (70%), Gaps = 12/234 (5%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | ||||| ||||| | ||| ||| || || |||||||| |||| Sbjct 1185108 TCCACCACGAAGACGGAGCACAAGGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCGGC 1185167 Query 34222 CAGCTGACGGTCG-TCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280 || || | ||| || || | |||||||||||| || || | || ||||||||| || Sbjct 1185168 TAG-TGTCCGTCCATCTTCGAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCCGGGG 1185226 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTC-GA--- 34335 | || | ||||||||| ||| || ||||| | || |||||| | ||| || Sbjct 1185227 GAACTCCCTCCTTGTCTTGAATC-TTAGCTTTGACAT----TATCGATTGTGTCAGAGCT 1185281 Query 34336 TTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||| || || | || || ||||| || || || ||||| || || || ||||| Sbjct 1185282 TTCAACCTCTAATGTAATAGTTTTCCCCGTAAGTGTTTTGACGAAAATTTGCAT 1185335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322948112387840