Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq23 150 2e-31 >seq23 Length=5684809 Score = 150 bits (166), Expect = 2e-31 Identities = 567/877 (65%), Gaps = 33/877 (4%) Strand=Plus/Minus Query 15927 TTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTC 15986 ||||||| || || ||||| ||||| | |||||| || ||||||||||| || || | Sbjct 1473752 TTGACATCACAGATGCCTTTTGGTATTCCCCAACTCTTTTCTCAAAGAAATTAGTCTTCC 1473693 Query 15987 CTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACA--ATAGTATTTATC 16044 ||| || ||||| ||||| ||||||| || |||| ||||| |||| ||| || Sbjct 1473692 CTTGCAACGAAATCAACTCCATCCAATCAAATGGGTTTT--GAACATTATAGATTTTCTC 1473635 Query 16045 GCATCCCAAT--TCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAA 16102 | | |||||| |||||| | | ||||||||||||||||| || || || |||| ||| Sbjct 1473634 GTACCCCAATGTTCCAACCA--ACCTATCCGCCACAAATTCAATGTATTGACTCATCAAA 1473577 Query 16103 TCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATA 16162 || | |||||||| | | || || | || || | || | | |||||| Sbjct 1473576 TCTCCATTCATTCCAACAAGAGCCACCGGCAAAGCATCACAAACGAATTCCCTCTCTATA 1473517 Query 16163 TTAACCGCTTCAATGATTATATCTCTTACTACACTAT-TTAACGGAGGGT-TTAAT-AAG 16219 | || || || | | || | || ||| | || | || | | || | || Sbjct 1473516 TCCACGGCCTCCGTAACAATCTGCCTCACT---CGATCCTCACTCAATTTCTTCCTCAAC 1473460 Query 16220 TGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCG 16279 | | ||| | |||||||||||||||||| | ||||| || | || || ||| Sbjct 1473459 AATGAATACAACAAACAAGCAAAATCACAATGAAGACCTTCATCTCGTGAAATCAATTCG 1473400 Query 16280 TTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCC--AAAATATAGCGGCAA 16337 ||||| || || | || ||||||| || |||||||| | || |||||| ||| | || Sbjct 1473399 TTTGAGAACGTCAATCCAGGCATTAACCCACGTTTTTTCAACCAGAAAATAGAGCAGAAA 1473340 Query 16338 ATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACG 16397 | ||| || ||||| || || || || |||||||| | | |||||| | | Sbjct 1473339 CT--ACCTGAGAAGAAAATTCCCTCGACGCAAGCAAATGCCAAAATCCGCTCAGCAAA-- 1473284 Query 16398 TTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCA 16457 | | | || || ||||| || ||||||| || || | || ||||| | Sbjct 1473283 -TGAGTCCGTGCTATCAATCCACTTCAACGCCCAATCGGCCTTCTTCTTCACACATGGGA 1473225 Query 16458 TGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTA 16517 | || || |||| ||| | ||| || || || ||| |||||||| || | Sbjct 1473224 CAGTATCAATAGCATGAAACAGCCGATTCTTCTCACTGGAATCCTTGATATAAGTTTCAA 1473165 Query 16518 TTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGC 16577 || | ||||||||| || |||||||| ||||| || || ||||| ||||| ||| Sbjct 1473164 GGAGAAGACTATACATCTCAGAATGAATGTTCTCAATACAAATTTGAAATCCATAGAAGG 1473105 Query 16578 ATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTA 16637 ||| ||||| | | ||| ||||| |||| | | || | ||| || ||| | Sbjct 1473104 CTCTGGCTTCAGCGACTTGGACTTCTTTCATGAACCGTCCGGCAAGGTTCTCCAAAACGA 1473045 Query 16638 TTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTG 16697 | ||||| || || || || ||||| | || | || || | ||| ||| || | Sbjct 1473044 TACCATCAGAGGCGGCGAAGAAGGCAAGGACGTAAGTGATGAAGTGTTTCTCG---TCGG 1472988 Query 16698 AAAGTTTTAACCAGTCAGAA------AAATCTTTTGATAAATCGACCTCTTCTACAGTCC 16751 || |||| | || || | |||| ||| | |||||||||||| | |||| Sbjct 1472987 AA---GTTAAGGAATCCCAATGGCGGAGGTCTTGTGAGAGATCGACCTCTTCGGCGGTCC 1472931 Query 16752 AAAAAGAAGCAACAGCCTTTTTATACATTTTCCATAT 16788 | || || || | || || || ||||| | ||| || Sbjct 1472930 AGAAGGAGGCTAGGGCTTTCTTGTACATCTCCCAGAT 1472894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462330094030400