Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq78 111 1e-19 seq1 98.7 8e-16 seq16 96.9 3e-15 seq32 84.2 2e-11 >seq78 Length=1515738 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||| ||||||||||| ||| || | || | || |||| ||| Sbjct 1184677 GTGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAATGTACGTCCATCCTCCAATTG 1184736 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 |||||| ||||| || | | || ||||| ||||| | ||||||||||||| ||||| Sbjct 1184737 TTTTCCAGCGAAAATGAGTCTTTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATTTT 1184796 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 |||||| | | | |||| | ||| ||||||| || || ||||| || || Sbjct 1184797 AGCCTTAACGTTATCAATGGTGTCTGAGCTCTCAACCTCCAATGTGATTGTCTTTCCTGT 1184856 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || ||||||||||| |||||||| Sbjct 1184857 CAAGGTCTTCACAAATATTTGCAT 1184880 >seq1 Length=8341428 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||| |||||||||||||| || | | || ||||| || Sbjct 3816740 GTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGCAAGAGTCCTTCCATCCTCCAGCTG 3816799 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||||||||| ||||||| ||| ||||| || || | || ||||| || |||||| Sbjct 3816800 CTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCTTGAATTTT 3816859 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 | |||||| | | | | || | ||| ||||| | |||||| ||||| || || Sbjct 3816860 TGCCTTAACGTTGTCAATGGTATCGGAGCTCTCGACCTCGAGGGTAATTGTCTTCCCAGT 3816919 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || |||||| || || || ||||| Sbjct 3816920 CAAAGTCTTGACGAATATCTGCAT 3816943 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| | | |||| || | ||| || || ||| |||||||||||||||||| Sbjct 3817843 GCCACCACGAAGCCTTAGGACAAGGTGAAGAGTTGACTCTTTCTGAATGTTGTAGTCGGC 3817902 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || || | || || ||||| || |||||||| ||||| || || || || || || Sbjct 3817903 AAGAGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAGATCAATCGTTGCTGATCCGGGGG 3817962 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || ||||| ||| ||||| ||| || | | | |||| | |||||| Sbjct 3817963 AATCCCTTCCTTATCCTGGATTTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 3818022 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| | ||| || |||||||| || || ||||| || ||||||||||| Sbjct 3818023 CTCAAGGGTGATGGTCTTGCCTGTAAGGGTCTTAACGAAGATTTGCAT 3818070 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||||||||| || || || | | || || || ||||| ||||| || Sbjct 3816524 CTCCTTCTGAATGTTATAATCAGCAAGGGTCCTTCCATCTTCAAGCTGTTTCCCGGCAAA 3816583 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||||| ||| ||||| || || | |||||||||||| || ||||||||| || Sbjct 3816584 GATCAACCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGAA-TTTTTGCTTTCACGT 3816642 Query 45265 CG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCA 45323 | | | | || || ||||||||||| || || ||||| || |||| ||||| | Sbjct 3816643 TGTCGATTGTATCAGAACTCTCCACCTCCAAAGTGATGGTCTTTCCAGTCAAGGTCTTAA 3816702 Query 45324 CAAAGATTTGCAT 45336 | ||||| ||||| Sbjct 3816703 CGAAGATCTGCAT 3816715 >seq16 Length=5655878 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCG--TTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGA 45203 ||||||||||||||||||||| | |||| || |||| || || || |||||||||| Sbjct 2199352 TCCTTCTGAATGTTGTAGTCGGCTAGAGTT--CGGCCGTCCTCGAGCTGCTTTCCGGCGA 2199295 Query 45204 ATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCG 45263 | ||||| ||||| ||||| || || | || ||||||||| || ||| ||| || Sbjct 2199294 AAATCAAACGCTGCTGGTCCGGGGGGATTCCTTCCTTGTCCTGGATCTTTGCCTTGACAT 2199235 Query 45264 CCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCA 45323 | | | | || | ||| || || | || || ||||| ||||| || || |||| Sbjct 2199234 TGTCGATGGTATCGGAGCTCTCAACTTCGAGAGTGATGGTCTTACCCGTTAGGGTTTTCA 2199175 Query 45324 CAAAGATTTGCATG 45337 | ||||| |||||| Sbjct 2199174 CGAAGATCTGCATG 2199161 >seq32 Length=4239389 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| ||||| || ||||||||||| |||||||| || || |||| || Sbjct 977078 ACCAAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCAGCGAGAGTCCGCCCGTCCTCG 977137 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || || | | ||||||||| || || | ||| |||||||| Sbjct 977138 AGCTGCTTACCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGT 977197 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | | || || ||||||||| | || || || ||| Sbjct 977198 ATTTTAGCCTTGACATTGTCAATGGTATCAGAACTCTCCACCTCAAGAGTGATGGTTTTG 977257 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||||||||| |||||||| Sbjct 977258 CCAGTAAGGGTCTTCACAAATATTTGCAT 977286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394923701500744