Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq23 125 7e-24 >seq23 Length=5684809 Score = 125 bits (138), Expect = 7e-24 Identities = 430/656 (66%), Gaps = 27/656 (4%) Strand=Plus/Minus Query 13913 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13972 ||||| ||||| | ||||||||| |||||||| ||||| || |||| || || || Sbjct 1473735 TTTTGGTATTCCCCAACTCTTTTCTCAAAGAAATTAGTCTTCCCTTGCAACGAAATCAAC 1473676 Query 13973 TCCATAAAATCAAATGGATTTGTTGACATAA-ACACTTTATCACAACCTA--GTTCTAAT 14029 ||||| |||||||||| ||| | |||| | | | ||| || | || | |||| || Sbjct 1473675 TCCATCCAATCAAATGGGTTT-TGAACATTATAGATTTTCTCGTACCCCAATGTTCCAAC 1473617 Query 14030 AGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 14089 || |||||||| | || ||||| |||||| ||| ||||| | |||||| || | Sbjct 1473616 C--AACCTATCCGCCACAAATTCAATGTATTGACTCATCAAATCTCCATTCATTCCAACA 1473559 Query 14090 AGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATA 14149 || || || | || | ||||| | |||||| ||| ||||| | | | Sbjct 1473558 AGAGCCACCGGCAAAGCATCACAAACGAATTCCCTCTCTATATCCACGGCCTCCGTAACA 1473499 Query 14150 ATAATCGTAATAATTTCATTAGAAGGAGGATATT--TTAG--ATGTTTAAAAATTAAACA 14205 || | | | || | | | | || | | ||| || || ||||| Sbjct 1473498 ATCTGCCTCACTCGATCCTCACTC--AATTTCTTCCTCAACAATGAATACAAC--AAACA 1473443 Query 14206 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 14265 ||||||||||||||||| || ||||||| ||| | ||||||||| || || ||||| Sbjct 1473442 AGCAAAATCACAATGAAGACCTTCATCTCGTGAAATCAATTCGTTTGAGAACGTCAATCC 1473383 Query 14266 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC-GAATGATCCGGAAAAGAATA 14324 ||||| || || |||||||| ||||| || || | ||| ||| || || ||||| | Sbjct 1473382 AGGCATTAACCCACGTTTTTTCAACCAGAAAATAG-AGCAGAAACTACCTGAGAAGAAAA 1473324 Query 14325 TTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT- 14383 ||||||| || |||||| || | | || || |||| || | || | || Sbjct 1473323 TTCCCTCGACGCAAGCAAATGCCAAAATCCGCTCAGCAAATGA-----GTCCGTGCTATC 1473269 Query 14384 -ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14442 ||||| || ||||| || | || || || | | | | || |||||||||| Sbjct 1473268 AATCCACTTCAACGCCCAATCGGCCTTCTTCTTCACACATGGGACAGTATCAATAGCATG 1473209 Query 14443 AAATAAATGTTCCTTCT--CTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14500 ||| | | | ||||| || | | |||| || || || |||| || | |||||| Sbjct 1473208 AAACAGCCGATTCTTCTCACTGGAATCCTTG--ATATAAGTTTCAAGGAGAAGACTATAC 1473151 Query 14501 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTC 14556 || ||||| || ||||| || ||| || ||||| ||||| || ||| ||||| Sbjct 1473150 ATCTCAGAATGAATGTTCTCAATACAAATTTGAAATCCATAGAAGGCTCTGGCTTC 1473095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482155893475520