Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq23 185 8e-42 seq1 102 7e-17 seq16 100 3e-16 seq78 98.7 9e-16 >seq23 Length=5684809 Score = 185 bits (204), Expect = 8e-42 Identities = 578/884 (65%), Gaps = 31/884 (4%) Strand=Plus/Plus Query 57545 CATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTT 57604 |||||| || ||| ||||||| | || ||| | |||||||| || || ||| || || Sbjct 1472869 CATGTTCCCAATTCAATATCCTCAAATCTGGGAGATGTACAAGAAAGCCCTAGCCTCCTT 1472928 Query 57605 TTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGA 57664 ||||||| |||||| || || || || | || || || ||||||||||| | | Sbjct 1472929 CTGGACCGCCGAAGAGGTCGATCTCTCACAAGACCTCCGCCATTGGGATTCCTT---AAC 1472985 Query 57665 ATCTGA-GAGAA--ATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTAT 57721 || || ||||| | || || | |||| | || || |||||||| || |||||||| Sbjct 1472986 TTCCGACGAGAAACACTTCATCACTTACGTCCTTGCCTTCTTCGCCGCCTCTGATGGTAT 1473045 Query 57722 TGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATG 57781 ||| ||||| | | || | | || ||||||| ||||| | || || ||| Sbjct 1473046 CGTTTTGGAGAACCTTGCCGGACGGTTCATGAAAGAAGTCCAAGTCGCTGAAGCCAGAGC 1473105 Query 57782 CTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCAT 57841 ||| || ||||||||| | ||||| ||| | ||||| || |||||| || ||| | Sbjct 1473106 CTTCTATGGATTTCAAATTTGTATTGAGAACATTCATTCTGAGATGTATAGTCTTCTCCT 1473165 Query 57842 CGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAAT 57901 || || || | ||||| | ||||| | | ||||| | || || || || | Sbjct 1473166 TGAAACTTATATCAAGGATTCCAGTGAGAAGAATCGGCTGTTTCATGCTATTGATACTGT 1473225 Query 57902 GCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCAC 57961 || | |||||||| || ||| | | || ||||| | || ||||| | | Sbjct 1473226 CCCATGTGTGAAGAAGAAGGCCGATTGGGCGTTGAAGTGGATTGATAG---CACGGACTC 1473282 Query 57962 GTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT 58021 || || ||| || | | || || || |||||| || || ||||| || || || || Sbjct 1473283 ATTTGCTGAGCGGATTTTGGCATTTGCTTGCGTCGAGGGAATTTTCTTCTCAGGTAGTTT 1473342 Query 58022 -TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACG 58080 ||| | || || ||| |||| ||||| || | ||||| || ||||||| |||| Sbjct 1473343 CTGC-TCTATTTTCTGGTTGAAAAAACGTGGGTTAATGCCTGGATTGACGTTCTCAAACG 1473401 Query 58081 AGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACA 58140 | ||||| || || || || ||||| ||| ||||||||| || | |||| | || Sbjct 1473402 AATTGATTTCACGAGATGAAGGTCTTCATTGTGATTTTGCTTGTTTGTTGTATT----CA 1473457 Query 58141 TTGT----CAATAAACCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCG 58196 |||| || ||| || |||||| | | | ||| | || ||||| || | Sbjct 1473458 TTGTTGAGGAAGAAATTGAGTGAGGATCGAGTGAGGCAGATTGTTACGGAGGCCGTGGAT 1473517 Query 58197 ATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGAT 58256 || || | || || || || || | |||||||| | | || ||||| ||| Sbjct 1473518 ATAGAGAGGGAATTCGTTTGTGATGCTTTGCCGGTGGCTCTTGTTGGAATGAATGGAGAT 1473577 Query 58257 TTGAT--GTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAG 58314 ||||| ||||| |||||||| ||||| || || || || | | |||| ||||| | Sbjct 1473578 TTGATGAGTCAA--TACATTGAATTTGTGGCGGATAG--GTTGGTTGGAAC--ATTGGGG 1473631 Query 58315 AGCGTCA----TTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAG 58370 || | || || |||| || ||||||| ||| | |||| ||| | | Sbjct 1473632 TACGAGAAAATCTATAATGTTCAAAACCCATTTGATTGGATGGAGTTGATTTCGTTGCAA 1473691 Query 58371 GGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAA 58414 || ||||| || || || || |||| |||| | ||||| ||||| Sbjct 1473692 GGGAAGACTAATTTCTTTGAGAAAAGAGTTGGGGAATACCAAAA 1473735 >seq1 Length=8341428 Score = 102 bits (112), Expect = 7e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||||||||| || |||||||| || || || || |||||| |||| || || | || Sbjct 3817615 CATGCAAATTTTTGTCAAGACTCTTACCGGAAAGACTATCACCCTCGAGGTGGAGTCCTC 3817556 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | | || | ||||| | || ||| |||||||| | || || ||||| Sbjct 3817555 CGATACCATTGATAACGTCAAGGCCAAGATCCAGGATAAGGAAGGTATTCCCCCAGACCA 3817496 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 ||| | || || ||||| || || |||||||| || | | | ||| | ||||| | Sbjct 3817495 GCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAGGA-TGGACGAACTCTTGCTGATTACA 3817437 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||| || || ||||| ||||||||||| || || |||| Sbjct 3817436 ACATCCAGAAGGAATCTACTCTTCATCTTGTCCTCCGACT 3817397 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/212 (71%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTC-GT-AAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGT 31250 ||||||||||| || ||| ||||| || || || || |||||| | || ||||| | | Sbjct 3817174 ATGCAAATTTTTTGTCAAAAACTCTCACCGGGAAGACCATCACCTTGGAGGTTGAGTCTT 3817115 Query 31251 CCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC-GAC 31309 | |||| | || | || || | || ||||||||||||| | || ||| ||| Sbjct 3817114 CTGACACAATTGACAACGTGAAGGCTAAGATTCAGGACAAGGAAGGCATTCCCCCCAGAC 3817055 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| | || || |||||||| |||||||||||||| ||| | ||||| Sbjct 3817054 CAGCAGAGACTTATCTTCGCTGGGAAACAGTTGGAAGATGGCCGAACTCTTGCAGATTAC 3816995 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| || || || ||||| || ||||| || Sbjct 3816994 AACATCCAGAAGGAGTCGACCCTCCATCTTGT 3816963 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||| |||| || || || || ||| |||| || || ||| Sbjct 3816943 ATGCAGATATTCGTCAAGACTTTGACTGGGAAGACAATTACCCTCGAGGTCGAGAGCTCC 3816884 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || |||| | | || | ||| || ||||||||| | || || ||||| Sbjct 3816883 GATACCATTGACAACGTTAAGGCAAA-AATTCAAGATAAGGAAGGCATTCCCCCAGACCA 3816825 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | | || ||||| || || ||| |||| || | |||| | || || || Sbjct 3816824 GCAGAGGTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGAAGGACTCTTGCTGACTACAA 3816765 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||||||| || || || ||||| || || || | |||||||| || Sbjct 3816764 CATTCAAAAGGAGTCCACCCTTCACCTTGTTCTCCGTCTGAGGGGAGG 3816717 >seq16 Length=5655878 Score = 100 bits (110), Expect = 3e-16 Identities = 164/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 |||| |||||| || ||||| || || || || || || || ||||| |||| ||||| Sbjct 2199156 TCAACCATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATCACTCTCGAAGTTGAG 2199215 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCC 31305 ||||| | |||| | ||||| || ||| | |||||||||||| | || || Sbjct 2199216 AGCTCCGATACCATCGACAATGTCAAGGCAAAGA-TCCAGGACAAGGAAGGAATCCCCCC 2199274 Query 31306 CGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGA 31365 |||||||||||| | || ||||| || || ||| | || ||| ||| | ||| Sbjct 2199275 GGACCAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTCGAGGACGGCCGAACTCTAGCCGA 2199334 Query 31366 TTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || |||||||| || |||||||| || || || || ||| | || || || || Sbjct 2199335 CTACAACATTCAGAAGGAATCGACCCTCCACCTTGTGCTTCGTCTCAGAGGAGG 2199388 >seq78 Length=1515738 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || || || || || ||||| || || | || |||||| || Sbjct 1185335 ATGCAAATTTTCGTCAAAACACTTACGGGGAAAACTATTACATTAGAGGTTGAAAGCTCT 1185276 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | || |||||||| || || || || |||||| Sbjct 1185275 GACACAATCGATAATGTCAAAGCTAAGATTCAAGACAAGGAGGGAGTTCCCCCGGACCAG 1185216 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || || ||||| ||| | ||||| ||| | |||||| ||| Sbjct 1185215 CAGAGGTTGATCTTTGCAGGCAAGCAGCTCGAAGATGGACGGACACTAGCCGATTACAAC 1185156 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||| ||||| |||||||| || || || Sbjct 1185155 ATTCAAAAGGAATCCACTCTTCACCTTGTGCT 1185124 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| ||||||| || || ||||| | || ||||| || Sbjct 1184880 ATGCAAATATTTGTGAAGACCTTGACAGGAAAGACAATCACATTGGAGGTTGAGAGCTCA 1184821 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | ||| ||||||||| || | || || |||||| Sbjct 1184820 GACACCATTGATAACGTTAAGGCTAAAATCCAGGACAAGGAGGGTATCCCTCCTGACCAG 1184761 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || | || || |||||||| ||||| ||||| || | | | || || |||||| || Sbjct 1184760 CAAAGACTCATTTTCGCTGGAAAACAATTGGAGGA-TGGACGTACATTGGCCGATTACAA 1184702 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||||| || || || || || || || ||| | || | || |||| Sbjct 1184701 CATTCAAAAGGAGTCCACCCTCCACCTTGTCCTTCGTCTTCGTGGTGGTA 1184652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445591080074880