Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq23 158 1e-33 seq7 91.5 1e-13 >seq23 Length=5684809 Score = 158 bits (174), Expect = 1e-33 Identities = 567/876 (65%), Gaps = 18/876 (2%) Strand=Plus/Minus Query 11338 CTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATA 11397 |||||| ||||| | ||||| | || || ||||||||||| |||| | || || | Sbjct 1473736 CTTTTGGTATTCCCCAACTCTTTTCTCAAAGAAATTAGTCTTCCCTTGCAACGAAATCAA 1473677 Query 11398 CTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTT-- 11455 |||||| | ||| || || | ||||| ||| ||| || | || || |||| Sbjct 1473676 CTCCATCCAATCAAATGGGTTTTGAACATTATAGATTTTCTCGTACCCCAA---TGTTCC 1473620 Query 11456 -AATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTAT 11514 | || ||||| || || ||||| || || ||| ||| ||| | |||||| || | Sbjct 1473619 AACCAACCTATCCGCCACAAATTCAATGTATTGACTCATCAAATCTCCATTCATTCCAAC 1473560 Query 11515 AAGATCCACCGGAATAGCAACTGTCAAA--AACTCCTTTTCTATATTAACCGCATCAATG 11572 |||| ||||||| | |||| | |||| || ||| | ||||||| || || || | Sbjct 1473559 AAGAGCCACCGGCAAAGCATCA--CAAACGAATTCCCTCTCTATATCCACGGCCTCCGTA 1473502 Query 11573 ATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAA-ACATTAAACA 11631 | ||| | | | |||| | | | | | || | || ||| ||||| Sbjct 1473501 ACAATCTGCCTCACTCGATCCTCACTCAATTTCT-TCCTCAACAATGAATACAACAAACA 1473443 Query 11632 CGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCC 11691 |||||||||||||| | |||||| |||| || | ||| || || || || ||||| Sbjct 1473442 AGCAAAATCACAATGAAGACCTTCATCTCGTGAAATCAATTCGTTTGAGAACGTCAATCC 1473383 Query 11692 GGGCATCAATCCTCGtttttttATCC--AAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749 ||||| || || |||||||| | || |||||| ||||| || | ||| || ||||| Sbjct 1473382 AGGCATTAACCCACGTTTTTTCAACCAGAAAATAGAGCAGAAACT--ACCTGAGAAGAAA 1473325 Query 11750 ATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATC 11809 |||||||| || |||||||| | | | || || || | ||||| ||| Sbjct 1473324 ATTCCCTCGACGCAAGCAAATGCCAAAATCCGCTCAGCAAATGAGTCCGTGCTATCAATC 1473265 Query 11810 CATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAAT 11869 || || |||||||| || ||||| || || ||| | || || ||||| | ||| Sbjct 1473264 CACTTCAACGCCCAATCGGCCTTCTTCTTCACACATGGGACAGTATCAATAGCATGAAAC 1473205 Query 11870 AAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCT 11929 | | | || || | ||| | | ||| || || | | | ||||||||| || Sbjct 1473204 AGCCGATTCTTCTCACTGGAATCCTTGATATAAGTTTCAAGGAGAAGACTATACATCTCA 1473145 Query 11930 GAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGT 11989 |||||||| || || ||| ||||||||||||||||| || || || | || Sbjct 1473144 GAATGAATGTTCTCAATACAAATTTGAAATCCATAGAAGGCTCTGGCTTCAGCGACTTGG 1473085 Query 11990 ACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAA 12048 || || ||| || | | | || | ||||| || ||||||||| | || || Sbjct 1473084 ACTTCTTTCAT-GAACCGTCCGGCAAGGTTCTCCAAAACGATACCATCAGAGGCGGCGAA 1473026 Query 12049 AAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATC 12108 || || || | | | || |||| ||| ||||| |||||| |||||||| Sbjct 1473025 GAAGGCAAGGACGTAAGTGATGAAGTGTTTCTCGTCGGAAGTTAAGGAATCCCAATGGCG 1472966 Query 12109 TAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATA 12168 | |||| ||| | ||| || ||||| ||||||| || || | | || || || Sbjct 1472965 GAGGTCTTGTGAGAGATCGACCTCTTCGGCGGTCCAGAAGGAGGCTAGGGCTTTCTTGTA 1472906 Query 12169 CATTTTCCAGATATCATGATACTTAATAGGGAAAAT 12204 ||| | |||||| | | |||| | ||| ||||| || Sbjct 1472905 CATCTCCCAGATTTGAGGATATTGAATTGGGAACAT 1472870 >seq7 Length=7328097 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 38173 CCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCA 38232 ||||| |||| || ||||| | | || | ||| ||| | | |||||| | |||||| Sbjct 6776014 CCTCCTTGATCAACATATCGAGCAGTATCATTGAATACCCGCAGCATAGGCAAAATACCA 6776073 Query 38233 TTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGAC 38292 |||||| | || ||| | || |||||| ||||| | || || ||||| || || Sbjct 6776074 TTAGATGTTCCATTTGTTCCACGAATATAACTACCCATGGCACGAATATTGTGGATGGAA 6776133 Query 38293 AATCCTATTCCACCTGCATGTTTTGAT-ATTAAAGCGCATTGTTTTAACGTATCAAATAT 38351 | || || ||||| || | ||| | || | ||| || | |||||| |||||| |||| Sbjct 6776134 ACACCAATACCACCAGC-GGACTTGCTAATGACAGCACACTCTTTTAAGGTATCATATAT 6776192 Query 38352 ACCTTCTATACTGTCATCCTTTAT 38375 ||||||||||| || ||||| || Sbjct 6776193 TCCTTCTATACTATCCTCCTTCAT 6776216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468340529196160