Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq23 250 3e-61 seq7 95.1 2e-14 >seq23 Length=5684809 Score = 250 bits (276), Expect = 3e-61 Identities = 577/867 (67%), Gaps = 2/867 (0%) Strand=Plus/Minus Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926 ||||||||||| || || | ||| || || |||||||| || |||| || || || Sbjct 1473735 TTTTGGTATTCCCCAACTCTTTTCTCAAAGAAATTAGTCTTCCCTTGCAACGAAATCAAC 1473676 Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATC 35986 ||||| |||| ||||| || ||||||||| ||||| | | |||||| || | Sbjct 1473675 TCCATCCAATCAAATGGGTTTTGAACATTATAGATTTTCTCGTACCCCAATGTTCCAACC 1473616 Query 35987 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 36046 || ||||| || |||||||| || ||| |||||| || | ||||||||| | ||| Sbjct 1473615 AACCTATCCGCCACAAATTCAATGTATTGACTCATCAAATCTCCATTCATTCCAACAAGA 1473556 Query 36047 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 36106 || || | ||| || || ||||| || ||| || || || || | ||| Sbjct 1473555 GCCACCGGCAAAGCATCACAAACGAATTCCCTCTCTATATCCACGGCCTCCGTAACAATC 1473496 Query 36107 GATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 36166 | ||| || |||||| | | | || | | ||| |||||| || ||| Sbjct 1473495 TGCCTCACTCGATCCTCACTCAATTTCTTCCTCAACAATGAATACAACAAACAAGCAAAA 1473436 Query 36167 TCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 36226 || || || ||||| || |||| ||| |||||||| || ||||| | ||| |||||| Sbjct 1473435 TCACAATGAAGACCTTCATCTCGTGAAATCAATTCGTTTGAGAACGTCAATCCAGGCATT 1473376 Query 36227 AGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTCCTTC 36285 | ||||| ||||| | ||| || || || ||| | | || || ||||||||||| || Sbjct 1473375 AACCCACGTTTTTTCAACCAGAAAATAGA-GCAGAAACTACCTGAGAAGAAAATTCCCTC 1473317 Query 36286 TACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTTTG 36345 || ||||| || | || | ||| || | | | || || |||||||| Sbjct 1473316 GACGCAAGCAAATGCCAAAATCCGCTCAGCAAATGAGTCCGTGCTATCAATCCACTTCAA 1473257 Query 36346 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtt 36405 ||||||||||||||||| || ||||| || | || || ||||||| ||| || || Sbjct 1473256 CGCCCAATCGGCCTTCTTCTTCACACATGGGACAGTATCAATAGCATGAAACAGCCGATT 1473197 Query 36406 tttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAAT 36465 || ||| | ||| || | ||| || |||| | |||||||||||| || |||||||| Sbjct 1473196 CTTCTCACTGGAATCCTTGATATAAGTTTCAAGGAGAAGACTATACATCTCAGAATGAAT 1473137 Query 36466 GTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGT 36525 ||| ||||| ||||||||||| ||||| ||| || || | | || |||||| | Sbjct 1473136 GTTCTCAATACAAATTTGAAATCCATAGAAGGCTCTGGCTTCAGCGACTTGGACTTCTTT 1473077 Query 36526 ACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 36585 || ||| | || | || || || || || ||| ||| || || || || | Sbjct 1473076 CATGAACCGTCCGGCAAGGTTCTCCAAAACGATACCATCAGAGGCGGCGAAGAAGGCAAG 1473017 Query 36586 TACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTT 36645 || | | || || | ||| |||| | |||| || ||||| || |||| Sbjct 1473016 GACGTAAGTGATGAAGTGTTTCTCGTCGGAAGTTAAGGAATCCCAATGGCGGAGGTCTTG 1472957 Query 36646 AGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCA 36705 || | ||| || ||||| | ||||| || || || || || || ||||| | ||| Sbjct 1472956 TGAGAGATCGACCTCTTCGGCGGTCCAGAAGGAGGCTAGGGCTTTCTTGTACATCTCCCA 1472897 Query 36706 GATGTCATGATATTGAATTGGAAAAAT 36732 ||| | | ||||||||||||| || || Sbjct 1472896 GATTTGAGGATATTGAATTGGGAACAT 1472870 >seq7 Length=7328097 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 |||||| ||||| | |||| ||| || | ||| | || | || ||| || | |||||| Sbjct 6776013 TCCTCCTTGATCAACATATCGAGCAGTATCATTGAATACCCGCAGCATAGGCAAAATACC 6776072 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||| ||||| ||||| || || ||||| || || | ||||||||||| || || Sbjct 6776073 ATTAGATGTTCCATTTGTTCCACGAATATAACTACCCATGGCACGAATATTGTGGATGGA 6776132 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | ||| || || || || || || | || || |||||| |||||||| || Sbjct 6776133 AACACCAATACCACCAGCGGACTTGCTAATGACAGCACACTCTTTTAAGGTATCATATAT 6776192 Query 66395 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 66436 || ||||||||||| ||| ||||| | || |||||||| Sbjct 6776193 TCCTTCTATACTATCCTCCTTCATGCATACAAGGAAACAGCT 6776234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657913940637760