Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 4e-14 seq32 89.7 5e-13 seq78 84.2 2e-11 seq7 82.4 8e-11 >seq1 Length=8341428 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||| || || || || || |||||| | || | ||| || || || || ||| Sbjct 3817646 GTAGATTCCTTCTGTATATTGTAATCGGCAAGGGTTCGGCCGTCCTCAAGTTGCTTTCCA 3817705 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| ||||||||||| || || || || ||||| || || ||| | || | ||| Sbjct 3817706 GCGAAGATGAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTATCC-TGAATCTTGGCTTT 3817764 Query 139688 AGCTGTTCCACT-GTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | | || | ||||||| | ||||||||||| ||| | |||||| ||||| | || Sbjct 3817765 AACGTTGTCAATAGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTTCCGGTAAGTGT 3817824 Query 139747 TTTTACGAATATTTGCAT 139764 |||||| || || ||||| Sbjct 3817825 TTTTACAAAGATCTGCAT 3817842 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||||| || ||||| || |||||||||||||| Sbjct 3816488 GCCACCACGGAGACGAAGGACAAGGTGAAGGGTCGACTCCTTCTGAATGTTATAATCAGC 3816547 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || || ||||| |||||||| || ||| |||||| | ||||| || || || Sbjct 3816548 AAGGGTCCTTCCATCTTCAAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGTGG 3816607 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || || || ||||| ||| |||||| ||| | | || | ||| || | ||||| Sbjct 3816608 AATTCCCTCCTTGTC-CTGAATTTTTGCTTTCACGTTGTCGATTGTATCAGAACTCTCCA 3816666 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | ||||| || ||||| || || ||||| || ||||| Sbjct 3816667 CCTCCAAAGTGATGGTCTTTCCAGTCAAGGTCTTAACGAAGATCTGCAT 3816715 Score = 89.7 bits (98), Expect = 5e-13 Identities = 152/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||| | ||| | ||||| || ||||| ||||||||||| || || | || || Sbjct 3816728 ACGGAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGCAAGAGTCCTTCC 3816787 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 || || ||||| || || || |||||| | ||||| || || || |||||||| || Sbjct 3816788 ATCCTCCAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTT 3816847 Query 139669 GTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCA 139727 || ||| |||||| ||| | | || | || |||| | ||| ||||| | ||| | Sbjct 3816848 ATC-TTGAATTTTTGCCTTAACGTTGTCAATGGTATCGGAGCTCTCGACCTCGAGGGTAA 3816906 Query 139728 CCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| || ||||| || || |||||||| |||||| Sbjct 3816907 TTGTCTTCCCAGTCAAAGTCTTGACGAATATCTGCATA 3816944 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| || |||||||| |||||||| || ||| | || | || || || || Sbjct 3817867 GTGAAGAGTTGACTCTTTCTGAATGTTGTAGTCGGCAAGAGTTCGGCCATCCTCAAGTTG 3817926 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || || || |||||| ||||||||||| || || || ||||| || || |||||| Sbjct 3817927 CTTGCCGGCGAAGATCAATCGTTGCTGATCCGGGGGAATCCCTTCCTTATCCTGGATTTT 3817986 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || | | || | ||||||| | ||||||||||| ||| | |||||||| || Sbjct 3817987 GGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTGCCTGT 3818046 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | || || ||||| |||||||| Sbjct 3818047 AAGGGTCTTAACGAAGATTTGCAT 3818070 >seq32 Length=4239389 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||| || ||||| || || |||||| | || | ||| || || || |||||| Sbjct 977318 GTAGATTCCTTTTGGATATTGTAATCGGCAAGCGTTCGGCCGTCCTCAAGTTGCTTACCA 977377 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | || || ||||| || ||||| ||||| || ||| | |||| || Sbjct 977378 GCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTATCT-TGAATCTTTGCCTT 977436 Query 139688 AGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | | || | ||| || | | |||||||| | ||| | || ||||| || | || Sbjct 977437 AACATTGTCAATTGTATCAGAGCTTTCCACCTCGAGGGTGATTGTTTTGCCAGTGAGAGT 977496 Query 139747 TTTTACGAATATTTGCAT 139764 |||||||||||||||||| Sbjct 977497 TTTTACGAATATTTGCAT 977514 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GCT 139596 || || || || || | ||||| || | ||| || || ||||||||||||||||| ||| Sbjct 976832 CCACCGCGCAATCGGAGCACTAAATGCAACGTTGATTCCTTTTGAATGTTATAATCTGCT 976891 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || || ||||| ||||| ||||||||| | |||| | || || || || || Sbjct 976892 -AGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCCGGTGG 976950 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || || || ||| || ||| | | || | ||| || | | |||||| Sbjct 976951 AATACCCTCCTTATCTTGGATCTTAGCTTTCACATTATCAATTGTATCAGAGCTCTCCAC 977010 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | || || || ||||| ||||| || || ||||||||| Sbjct 977011 TTCCAAGGTAATTGTTTTCCCAGTCAAGGTTTTCACAAAAATTTGCATA 977059 >seq78 Length=1515738 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || ||||| ||||||||||| |||||| || ||| | || | || || | ||||| || Sbjct 1184684 GTGGACTCCTTTTGAATGTTGTAATCGGCCAATGTACGTCCA-TCCTCCAATTGTTTTCC 1184742 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 ||| | || || | |||||| || ||||| || || || ||||| |||||| || Sbjct 1184743 AGCGAAAATGAGTCTTTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATTTTAGCCTT 1184802 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||| | | ||| ||||| | || | ||||| || ||||| || Sbjct 1184803 AACGTTATCAATGGTGTCTGAGCTCTCAACCTCCAATGTGATTGTCTTTCCTGTCAAGGT 1184862 Query 139747 TTTTACGAATATTTGCAT 139764 || || ||||||||||| Sbjct 1184863 CTTCACAAATATTTGCAT 1184880 >seq7 Length=7328097 Score = 82.4 bits (90), Expect = 8e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||| |||||||| || |||| |||||||||||||| || || || ||||| ||||| Sbjct 2411633 GAGTTGTTTACCGGCGAAGATGAGACGTTGCTGATCCGGGGGAATCCCTTCCTTGTCCTG 2411574 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| || || | | || | || || | | ||| ||||||| ||| | ||||| Sbjct 2411573 GATCTTGGCCTTGACGTTGTCGATCGTATCAGACGACTCAACCTCAAGGGTGATTGTCTT 2411514 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||||| ||||| |||||||| Sbjct 2411513 ACCGGTTAGGGTTTTAACGAAGATTTGCAT 2411484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495868898028800