Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq23 131 2e-25 >seq23 Length=5684809 Score = 131 bits (144), Expect = 2e-25 Identities = 446/676 (66%), Gaps = 37/676 (5%) Strand=Plus/Minus Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640 ||||| ||||| | ||||||||| |||||||| ||||| || |||| || || || Sbjct 1473735 TTTTGGTATTCCCCAACTCTTTTCTCAAAGAAATTAGTCTTCCCTTGCAACGAAATCAAC 1473676 Query 13641 TCCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATCACAACCTA--GTTCTAAT 13697 ||||| |||||||||| ||| | |||| | | | ||| || | || | |||| || Sbjct 1473675 TCCATCCAATCAAATGGGTTT-TGAACATTATAGATTTTCTCGTACCCCAATGTTCCAAC 1473617 Query 13698 AGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 13757 || ||||| || | ||| ||||| |||||| ||| ||||| | |||||| || | Sbjct 1473616 C--AACCTATCCGCCACAAATTCAATGTATTGACTCATCAAATCTCCATTCATTCCAACA 1473559 Query 13758 AGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATA 13817 || || || | || | ||||| | |||||| ||| ||||| | | | Sbjct 1473558 AGAGCCACCGGCAAAGCATCACAAACGAATTCCCTCTCTATATCCACGGCCTCCGTAACA 1473499 Query 13818 ATAATTGTAATAATC--TCATTAGAAGGAGGATATT--TTAG--ATGTTTAAAAATTAAA 13871 || || | || || | | | | || | | ||| || || ||| Sbjct 1473498 ATC--TGCCTCACTCGATCCTCACTC--AATTTCTTCCTCAACAATGAATACAAC--AAA 1473445 Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||||||||||||||| || ||||||| ||| | ||||||||| || || ||| Sbjct 1473444 CAAGCAAAATCACAATGAAGACCTTCATCTCGTGAAATCAATTCGTTTGAGAACGTCAAT 1473385 Query 13932 CCTGGCATCAATCCTCGtttttttAACC--AAAATATTGCAGCAAATGACCCGGAAAAGA 13989 || ||||| || || |||||||| |||| |||||| |||| || | || || |||| Sbjct 1473384 CCAGGCATTAACCCACGTTTTTTCAACCAGAAAATAGAGCAGAAACT--ACCTGAGAAGA 1473327 Query 13990 ATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCG 14049 | |||||||| || |||||| || | | || || |||| || | || | Sbjct 1473326 AAATTCCCTCGACGCAAGCAAATGCCAAAATCCGCTCAGCAAATGA-----GTCCGTGCT 1473272 Query 14050 AT--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14107 || ||||| || ||||| || | || || || | | | | || |||||||| Sbjct 1473271 ATCAATCCACTTCAACGCCCAATCGGCCTTCTTCTTCACACATGGGACAGTATCAATAGC 1473212 Query 14108 ATTAAATA-AATATTCCT-TCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA 14165 || ||| | |||| | || || | | |||| || || || |||| || | ||| Sbjct 1473211 ATGAAACAGCCGATTCTTCTCACTGGAATCCTTG--ATATAAGTTTCAAGGAGAAGACTA 1473154 Query 14166 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTC- 14224 ||||| ||||| || ||||| || ||| || ||||| ||||| ||| ||| ||||| Sbjct 1473153 TACATCTCAGAATGAATGTTCTCAATACAAATTTGAAATCCATAGAAGGCTCTGGCTTCA 1473094 Query 14225 -CGACCATTGTACTTC 14239 |||| ||| ||||| Sbjct 1473093 GCGAC--TTGGACTTC 1473080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479539322977600