Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq23 105 6e-18 >seq23 Length=5684809 Score = 105 bits (116), Expect = 6e-18 Identities = 242/359 (67%), Gaps = 9/359 (3%) Strand=Plus/Minus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 ||||| ||||||||||||||||| || ||||||| ||| | ||||||||| || || Sbjct 1473447 AAACAAGCAAAATCACAATGAAGACCTTCATCTCGTGAAATCAATTCGTTTGAGAACGTC 1473388 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC-GAATGATCCGGAAAA 13775 ||||| ||||| || || |||||||| ||||| || || | ||| ||| || || || Sbjct 1473387 AATCCAGGCATTAACCCACGTTTTTTCAACCAGAAAATAG-AGCAGAAACTACCTGAGAA 1473329 Query 13776 GAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTT 13835 ||| |||||||| || |||||| || | | || || ||| ||| | || | Sbjct 1473328 GAAAATTCCCTCGACGCAAGCAAATGCCAAAATCCGCTCAGCAA---ATGAGTCCGTGCT 1473272 Query 13836 TGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGC 13895 ||||| || ||||| || | || || || | | | | || || || || Sbjct 1473271 ATCAATCCACTTCAACGCCCAATCGGCCTTCTTCTTCACACATGGGACAGTATCAATAGC 1473212 Query 13896 ATTGAATAAATGTTCCTTCT--CTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA 13953 || || | | | ||||| || | | |||| || || || |||| || | ||| Sbjct 1473211 ATGAAACAGCCGATTCTTCTCACTGGAATCCTTG--ATATAAGTTTCAAGGAGAAGACTA 1473154 Query 13954 TACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTC 14012 ||||| ||||| || ||||| || ||| || ||||| ||||| || ||| ||||| Sbjct 1473153 TACATCTCAGAATGAATGTTCTCAATACAAATTTGAAATCCATAGAAGGCTCTGGCTTC 1473095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478400571024960