Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq78 96.9 3e-15 >seq78 Length=1515738 Score = 96.9 bits (106), Expect = 3e-15 Identities = 159/228 (70%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | |||||||| |||| ||| |||||||| | || || |||| Sbjct 1184882 CCTCCACGAAGACGCAACACCAAGTGGAGAGTTGATTCCTTTTGAATGTTATAGTCGGCT 1184941 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | || |||||||| || || || |||||||||| |||||| || | || Sbjct 1184942 AGAGTCCTACCATCTTCCAATTGCTTACCAGCGAAAATCAATCTCTGTTGGTCTGGTGGG 1185001 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| | || || | ||| ||| || | ||| || Sbjct 1185002 ATCCCTTCTTTATCTTGAATCTTAGCCTTAACATTATCAATTGTATCTGAACTCTCAACT 1185061 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || ||||| ||| ||| |||||||||||||||||||||| Sbjct 1185062 TCCAAAGTGATTGTTTTCCCG-TTAAAGTTTTCACAAAAATTTGCATT 1185108 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 42907 TGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGT 42966 |||| ||| ||||||||| | |||||||||| |||||||||| | || ||||||||| Sbjct 1184678 TGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAATGTACGTCCATCCTCCAATTGT 1184737 Query 42967 TTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAAC 43026 || || || ||||| | || || || || | || | ||| || || || ||| Sbjct 1184738 TTTCCAGCGAAAATGAGTCTTTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATTTTA 1184797 Query 43027 TCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTTTCCGGT 43085 | || || | ||| ||||| ||| ||| || || | || || || ||||| || Sbjct 1184798 GCCTTAACGTTATCAATGGTGTC-TGAGCTCTCAACCTCCAATGTGATTGTCTTTCCTGT 1184856 Query 43086 TAGAGTTTTCACAAAAATTTGCATT 43110 | || |||||||| ||||||||| Sbjct 1184857 CAAGGTCTTCACAAATATTTGCATT 1184881 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||| | || | |||| |||||||| | |||||||||| Sbjct 1185109 CCACCACGAAGACGGAGCACAAGGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCGGCT 1185168 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| ||| | || || | || ||||| ||||| ||||| | ||| || || | || Sbjct 1185169 AGTGTCCGTCCATCTTCGAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCCGGGGGA 1185228 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCT-CGAC 43061 || || || || || ||| ||||||| | | | |||||| ||| | | || Sbjct 1185229 ACTCCCTCCTTGTCTTGAATCTTAGCTTTGACATTATCGATTGTGTCAG-AGCTTTCAAC 1185287 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 |||| || |||||||| || || || ||||| || |||||||||||| Sbjct 1185288 CTCTAATGTAATAGTTTTCCCCGTAAGTGTTTTGACGAAAATTTGCATT 1185336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381223357152912