Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq78 93.3 4e-14 seq32 93.3 4e-14 seq1 89.7 5e-13 >seq78 Length=1515738 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||||||| | ||| || |||| || ||||||||||||||||||||||| Sbjct 1185565 CCACCACGTAAACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGTATGTTGTAATCAGCG 1185624 Query 143018 ATTGTGCTCGA--GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | | | |||| || || ||||| || ||||| | || || | |||||| || |||| Sbjct 1185625 A--GGGTTCGACCATCCTCAAGTTGCTTTCCAGCGAAAATAAGCCTTTGCTGGTCTGGAG 1185682 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || ||||| || || |||||| |||| | || | ||||| | ||| | Sbjct 1185683 GGATTCCTTCCTTATCTTGAATTTTGGCCTTTACATTGTCGATAGTGTCAGAACTTTCAA 1185742 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | |||| || | || || ||||| | ||||| || || |||||||| Sbjct 1185743 CCTCAAGGGTTATTGTTTTTCCGGTGAGAGTTTTCACAAAGATTTGCAT 1185791 >seq32 Length=4239389 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || ||||| | ||||||||| ||||| || ||||||||| | || | ||| || Sbjct 977306 ACCAAATGGAGTGTAGATTCCTTTTGGATATTGTAATCGGCAAGCGTTCGGCCGTCCTCA 977365 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 ||||| ||||||||| |||| || | || || ||||| || ||||| ||||| || | Sbjct 977366 AGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTATCTTGA 977425 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || ||| || | | || | || || | | ||| || || | || | || ||| Sbjct 977426 ATCTTTGCCTTAACATTGTCAATTGTATCAGAGCTTTCCACCTCGAGGGTGATTGTTTTG 977485 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || | |||||||||||||||||||| Sbjct 977486 CCAGTGAGAGTTTTTACGAATATTTGCAT 977514 >seq1 Length=8341428 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 |||||||| || ||||| ||||||||| | || | ||| || ||||| || ||| Sbjct 3817646 GTAGATTCCTTCTGTATATTGTAATCGGCAAGGGTTCGGCCGTCCTCAAGTTGCTTTCCA 3817705 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||||||||| || || || || ||||| || || ||| || ||| Sbjct 3817706 GCGAAGATGAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTATCCTGAATCTTGGCTTTA 3817765 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | || || |||| || | |||||| ||||| | |||| Sbjct 3817766 ACGTTGTCAATAGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTTCCGGTAAGTGTT 3817825 Query 143168 TTTACGAATATTTGCAT 143184 ||||| || || ||||| Sbjct 3817826 TTTACAAAGATCTGCAT 3817842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506814991236480