Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq78 118 8e-22 seq32 104 2e-17 seq1 86.0 5e-12 >seq78 Length=1515738 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || |||||||| || |||||||||||||||||||| || ||| | || || Sbjct 1185582 AACCAAGTGAAGGGTTGATTCTTTTTGTATGTTGTAATCAGCGAGGGTTCGACCATCCTC 1185641 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| || |||||| | || | | ||| ||||| || |||||||| || || Sbjct 1185642 AAGTTGCTTTCCAGCGAAAATAAGCCTTTGCTGGTCTGGAGGGATTCCTTCCTTATCTTG 1185701 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||||| ||||||| | || || || || | |||| || || | ||| || ||||| Sbjct 1185702 AATTTTGGCCTTTACATTGTCGATAGTGTCAGAACTTTCAACCTCAAGGGTTATTGTTTT 1185761 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||||||| ||||| |||||||| Sbjct 1185762 TCCGGTGAGAGTTTTCACAAAGATTTGCAT 1185791 Score = 109 bits (120), Expect = 4e-19 Identities = 152/212 (72%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || || || || || || ||||| ||||| || ||| |||| | || | ||| Sbjct 1184897 AACACCAAGTGGAGAGTTGATTCCTTTTGAATGTTATAGTCGGCTAGAGTCCTACCATCT 1184956 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || ||||| || |||||| | ||||| | |||||||| ||| || |||||||| || Sbjct 1184957 TCCAATTGCTTACCAGCGAAAATCAATCTCTGTTGGTCTGGTGGGATCCCTTCTTTATCT 1185016 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||| || ||| ||| | || || ||||| | | || || || || || || ||| Sbjct 1185017 TGAATCTTAGCCTTAACATTATCAATTGTATCTGAACTCTCAACTTCCAAAGTGATTGTT 1185076 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || | |||||| |||||||||||||| Sbjct 1185077 TTCCC-GTTAAAGTTTTCACAAAAATTTGCAT 1185107 Score = 95.1 bits (104), Expect = 9e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| ||||| || ||||| |||||||||||| ||| | | | ||||| | || Sbjct 1185133 TGAAGAGTGGATTCCTTTTGAATGTTGTAATCGGCTAGTGTCCGTCCATCTTCGAGCTGC 1185192 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 ||||| || | ||||| | || ||||| |||| ||| || ||||| ||| || Sbjct 1185193 TTGCCTGCAAAGATCAACCTCTGCTGGTCCGGGGGAACTCCCTCCTTGTCTTGAATCTTA 1185252 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || ||| | || || || || |||| || ||||| ||||| ||||| || || Sbjct 1185253 GCT-TTGACATTATCGATTGTGTCAGAGCTTTCAACCTCTAATGTAATAGTTTTCCCCGT 1185311 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| || ||||||||||| Sbjct 1185312 AAGTGTTTTGACGAAAATTTGCAT 1185335 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| | ||||| || ||||| || ||||| || | | | | | ||||| Sbjct 1185355 ACCAAATGCAAAGTGGATTCCTTTTGAATATTGTAGTCCGCCAAAGTCCGGCCATCTTCA 1185414 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||| |||||| | || | | |||||||| ||||| || ||||| || Sbjct 1185415 AGTTGTTTACCAGCGAAAATTAGCCTCTGTTGGTCAGGGGGAATACCCTCTTTATCTTGG 1185474 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| | || |||||||| |||| || |||||||| ||||||||| Sbjct 1185475 ATCTTAGCCTTCACATTATCGATGGTATCAGAGCTTTCCACCTCTAAGGTGATGGTTTTA 1185534 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || || |||||||| Sbjct 1185535 CCAGTGAGGGTTTTCACGAAGATTTGCAT 1185563 >seq32 Length=4239389 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | ||||| | |||||||| | || || || ||||| ||||| ||||| | Sbjct 976832 CCACCGCGCAATCGGAGCACTAAATGCAACGTTGATTCCTTTTGAATGTTATAATCTGCT 976891 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | || | ||||| | || || ||||| | ||||| | |||||||| |||| Sbjct 976892 AGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCCGGTGGA 976951 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || || || || || || || ||| || ||| | || || ||||| | || || Sbjct 976952 ATACCCTCCTTATCTTGGATCTTAGCT-TTCACATTATCAATTGTATCAGAGCTCTCCAC 977010 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||||||| ||||| || |||| ||||| ||||||||||||||| Sbjct 977011 TTCCAAGGTAATTGTTTTCCCAGTCAAGGTTTTCACAAAAATTTGCATA 977059 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| | || ||||| || || || || ||||| || ||||||||| Sbjct 977288 CCACCGCGAAGTCTAAGCACCAAATGGAGTGTAGATTCCTTTTGGATATTGTAATCGGCA 977347 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || ||| |||| || | ||| || ||||| | || | | ||||||||| |||| Sbjct 977348 AGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGA 977407 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || || ||||| || ||| ||||| ||| ||| | || || ||||| |||| || Sbjct 977408 ATGCCCTCTTTATCTTGAATCTTTGC-CTTAACATTGTCAATTGTATCAGAGCTTTCCAC 977466 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| || ||||| || || ||||||||||| || |||||||| Sbjct 977467 CTCGAGGGTGATTGTTTTGCCAGTGAGAGTTTTTACGAATATTTGCAT 977514 >seq1 Length=8341428 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/216 (70%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || | ||| ||||| || || || || ||||||||||| ||| ||| | ||| Sbjct 3816960 AACACAAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCTGCAAGAGTTCGGCCATCT 3817019 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTC-GTTTGGAATTCCTTCTTTGTC 15270 || || ||||| |||||| | || | | || ||||| | ||||| ||||| ||||| Sbjct 3817020 TCCAACTGTTTCCCAGCGAAGATAAGTCTCTGCTGGTCTGGGGGGAATGCCTTCCTTGTC 3817079 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||| || ||| || | || || || || | || || || ||||| ||||| Sbjct 3817080 CTGAATCTTAGCCTTCACGTTGTCAATTGTGTCAGAAGACTCAACCTCCAAGGTGATGGT 3817139 Query 15331 TTTACCTGTCAGAGTTTTT-AC-AAAAATTTGCATA 15364 || || || ||||||||| || ||||||||||||| Sbjct 3817140 CTTCCCGGTGAGAGTTTTTGACAAAAAATTTGCATA 3817175 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || ||||| |||||||| || ||| | || | || || | || Sbjct 3816741 TGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGCAAGAGTCCTTCCATCCTCCAGCTGC 3816800 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | ||||| | || ||||| ||||| ||||| || || |||||| Sbjct 3816801 TTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCTTGAATTTTT 3816860 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || | || ||||||||| | || || || | |||||| || || || ||| Sbjct 3816861 GCCTTAACGTTGTCAATGGTATCGGAGCTCTCGACCTCGAGGGTAATTGTCTTCCCAGTC 3816920 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 | ||| || || || || |||||| Sbjct 3816921 AAAGTCTTGACGAATATCTGCATA 3816944 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || || || || || ||||| ||||||||| || ||| |||| || | ||| Sbjct 3817640 TGGAGAGTAGATTCCTTCTGTATATTGTAATCGGCAAGGGTTCGGCCGTCCTCAAGTTGC 3817699 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || |||||| | || | |||||| ||||| ||||||||||| || || ||| ||| Sbjct 3817700 TTTCCAGCGAAGATGAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTATCCTGAATCTTG 3817759 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 || || | || || || ||| | || || || | ||| || || || || || Sbjct 3817760 GCTTTAACGTTGTCAATAGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTTCCGGTA 3817819 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || ||||||||||| || ||||| Sbjct 3817820 AGTGTTTTTACAAAGATCTGCAT 3817842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362040316047624