Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq78 100 2e-16 seq32 93.3 3e-14 >seq78 Length=1515738 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 43919 TGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGT 43978 || || ||| ||| |||||||| || |||||| ||| ||| |||| ||||||||| Sbjct 1184678 TGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAATGTACGTCCATCCTCCAATTGT 1184737 Query 43979 TTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTT 44038 ||||| || || || | | ||||||||| |||| | ||| || || || ||||| Sbjct 1184738 TTTCCAGCGAAAATGAGTCTTTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATTTTA 1184797 Query 44039 TGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTT 44098 || || || ||| || |||| ||| || || | || ||||| || || || Sbjct 1184798 GCCTTAACGTTATCAATGGTGTCTGAGCTCTCAACCTCCAATGTGATTGTCTTTCCTGTC 1184857 Query 44099 AAAGTCTTCACAAATATTTGCAT 44121 || |||||||||||||||||||| Sbjct 1184858 AAGGTCTTCACAAATATTTGCAT 1184880 Score = 95.1 bits (104), Expect = 9e-15 Identities = 149/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 |||||||| || || || || |||||||| ||||| ||| || | |||| Sbjct 1184897 AACACCAAGTGGAGAGTTGATTCCTTTTGAATGTTATAGTCGGCTAGAGTCCTACCATCT 1184956 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 |||||||| || || || || ||||| | || ||||| | || | |||||||||||| Sbjct 1184957 TCCAATTGCTTACCAGCGAAAATCAATCTCTGTTGGTCTGGTGGGATCCCTTCTTTATCT 1185016 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||| || || || || ||| ||||||| ||| || || | || |||||| Sbjct 1185017 TGAATCTTAGCCTTAACATTATCAATTGTATCTGAACTCTCAACTTCCAAAGTGATTGTT 1185076 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || |||||||| |||||||| |||||||| Sbjct 1185077 TT-CCCGTTAAAGTTTTCACAAAAATTTGCAT 1185107 >seq32 Length=4239389 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || || | ||||| | ||| ||||| | ||| || |||||||| |||||||| | Sbjct 976832 CCACCGCGCAATCGGAGCACTAAATGCAACGTTGATTCCTTTTGAATGTTATAATCTGCT 976891 Query 43955 A-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | | || |||| || | || || || ||||| ||||||| || |||||| | || Sbjct 976892 AGAGTCCTGC-CATCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCCGGTGG 976950 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||| || |||||| || || ||| || || ||| ||||| | |||||| Sbjct 976951 AATACCCTCCTTATCTTGGATCTTAGCTTTCACATTATCAATTGTATCAGAGCTCTCCAC 977010 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||||||||| || || || || |||||||| |||||||| Sbjct 977011 TTCCAAGGTAATTGTTTTCCCAGTCAAGGTTTTCACAAAAATTTGCAT 977058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354641554320672